Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0282 ATGCCCCACCGTCGCTCCTGGCACTCATCGCCACCCTTACTTAGCCCTCCACTCATAATCATTCTCTTCCCCATCGTCATTCTCACCATCCTCTTTCTCGCTCTGCCGCCGCTCCTCTCCGCTGCCACGCGCCTCGTACGCCCTGCCTCCGTCAAGACCAGCTGGGACTCCCTCAACATCCTTCTCGTCGTTTTCGCAATTCTGTGCGGCGTCTTTGCCAGACGAAATGAGGACGAACAGACCCCAAGAAATAACCACCACGACGCCGTTCCGGATCGAAACGCTGCGTTTCGACAAGTCCCTTCCGAAGGACAACCTCAGTGGCTTGGGTTCACAGGGGAAAGAAAGGAGTATATTAATGATACCCCTCTCAACCGGTTTCAGTCACCTGCAACCGGTGATACACGGTTGAGGATGAGAAGAAACAGCAGCTCTTATCCAGATCTGCGCCAGTGGGAAACCGGCGATGACCGGTACAAGTTCCGCTTCTTTGATGACTTCGAAATCGACAAGCAGTTCCGCACGCCGGCTAGGGACCATTTCCCCGCTTTCGACCACCGCAAACGATTGCCGGAATCATCACCATCACTGTCACCACAACCACAACATCAGCATCAACACCACGAACAACAGGACGATGAAGAAAAGGAAATTCCGGTTGATACCTTCGAAACTCGTCCTTCATCACCGCCGGTGAAATCAACTACGCCAACTCCTCCACCACCACCGCCGCCTCCTCCTCCGCCGGAATCGGCCCGTCGCAATGCAGGACGGTCGCGTCGGAAAACAGAGAGAGTCAGTGAGATAACCGTCGAGCTCGACGAGCGCGAGTTCACAACGATCCGCTCTCCGCCTCCGGCTCCTCCGACACCGCCTTCGCCATCGGCGAAGGTGCGATCGGAGCGTAAGAGCGAACGAAAGAAGAGCAATGTGAAGAGAGAGATAGCGATGGTTTGGGCTTCAGTTCTCTCCAACCAGCGAAAGAAAAAGAAGAAGCAAAGAGCAAAAAATAACCACGATCAACATTACGAAGATAATCCCGACGAATTAACGAACAGCACGACAGTGCCACCACCAACGCCGCCACCTCCACCACCTCCTCCGCCACCAACTTCAATGTTCCAAAGTCTATTCCGAAAAGGACTAGGCAAGAGCAAGAAAATCCACTCAGTGTCACCGCCACCACCCCCGCCACCTCCTCCGCCGTCGAAGCGGTGGTCAAAGCGCAAGAGCCACATCCCTCCTCCGTCTCCTCCATCTCCTCCGTCTCCCCCACGCCGTCGAAACACGGGGCGACCACCGCTGCCGAGCAGAAACGTCAATTTCCACGACGAGATTCACGAGTCAGCTAACGTCGGGAATCAGTCGCCGCTGATTCCAGTTCCGCCACCGCCTCCGCCGTTCAAGGTGAAGGCGATGAAGTTCGTGGTCCGTGGAGATTTCGTGAAGATACGCAGCAACCAGAGCTCGCGGTGTAGCTCTCCAGAAAGGGAGGAGATTATAATGAATGTATCGGAAAGTACAGTGAGTGAGAGTGTTACGGATAGTAACGGCGTTTTCTGTCCAAGCCCCGATGTGAACATTAAAGCTGAATCTTTCATCGCTAAGCGCAGGGGAGAGTGGAAGCTCGAAAAACTGAACTCCTTGAAGGAGAAAAGCAATGTCTCATTGCCTCGTAGGTTGTAG 1686 0.5451 MPHRRSWHSSPPLLSPPLIIILFPIVILTILFLALPPLLSAATRLVRPASVKTSWDSLNILLVVFAILCGVFARRNEDEQTPRNNHHDAVPDRNAAFRQVPSEGQPQWLGFTGERKEYINDTPLNRFQSPATGDTRLRMRRNSSSYPDLRQWETGDDRYKFRFFDDFEIDKQFRTPARDHFPAFDHRKRLPESSPSLSPQPQHQHQHHEQQDDEEKEIPVDTFETRPSSPPVKSTTPTPPPPPPPPPPPESARRNAGRSRRKTERVSEITVELDEREFTTIRSPPPAPPTPPSPSAKVRSERKSERKKSNVKREIAMVWASVLSNQRKKKKKQRAKNNHDQHYEDNPDELTNSTTVPPPTPPPPPPPPPPTSMFQSLFRKGLGKSKKIHSVSPPPPPPPPPPSKRWSKRKSHIPPPSPPSPPSPPRRRNTGRPPLPSRNVNFHDEIHESANVGNQSPLIPVPPPPPPFKVKAMKFVVRGDFVKIRSNQSSRCSSPEREEIIMNVSESTVSESVTDSNGVFCPSPDVNIKAESFIAKRRGEWKLEKLNSLKEKSNVSLPRRL* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0282 561 PANTHER COTTON FIBER (DUF761) 3 552 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 354 373 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 232 252 - -
Vra5g0282 561 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 3 552 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 178 465 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 390 404 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 121 151 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 122 150 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 254 279 - -
Vra5g0282 561 Coils Coil 325 345 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 205 222 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 178 192 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 298 313 - -
Vra5g0282 561 MobiDBLite consensus disorder prediction 412 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0282 Vra-Chr5 2660374 2662059 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0282 - - pvu:PHAVU_009G229500g 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0282 5 2660374 2662059 Vra5g0282 5 2660374 2662059 ECH