Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0268 ATGGCGTCGGTGTACATACCGGTGCATAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGATCAGCTTCCGCGTGATGCTTCCGACATCCTCGACATCCTTAAGGCTGAACAAGCCCCTCTCGATCTCTGGCTCATCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGACTATTATGCTGATGTTAGATATGAGAGGATAGCTATCTTAAATGCCCTAGGAGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAACGAGAAAAGGAGGAGCATTTTATTTTGGCAACGCAATACTACAACAAAGCATCTAGGATTGACATGCACGAGCCCTCCACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGGGAAGTAGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGTCCGTGATAATGTTCCTGCTCTTTTGGGCCAGGCTTGTGTTGAGTTCAACCGTGGACGATACTCAGATTCACTTGATCTGTATAAGAGAGCATTGCAAGTGTTTCCCAATTGCCCGGCAGCTGTTAGACTTGGCATAGGTCTATGCCGCTACAAATTAGGTCAATTTGAGAAGGCTCAGCAAGCATTTGAGCGAGTTCTACATCTAGATCCAGAAAATGTTGAGGCTCTAGTTGCCCTTGCAATAATGGACTTGCGTACTAATGAAGCTACTGGTATCAGGAAGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGTCAACATTTTTTAGTTGAGCAACTGACTGAAACTGCATTGGCTGTTACCAATCACGGGCCAACAAAGTCTCACTCATACTACAATTTAGCACGCTCGTACCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCACGAATTTGTCTTTCCTTATTATGGTCTGGGACAAGTGCAGATAAAGTTGGGAGATTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCCTGGAGGTATACCCGGATAATTGTGAGACATTGAAAGCGCTTGGGCATATATATGTTCAGCTTGGTCAAACGGACAAAGGCCAGGACTTTATTAGGAGAGCTACAAAAATTGATCCGCGTGATGCCCAGGCATTTCTTGAGCTGGGAGAATTGTTAATTCTTTCCGACACAGGAGCTGCACTTGATGCATTCAAAACTGCTCGAACTCTTTTTAAGAAGGGAAGTCAAGAAGTACCAATTGAATTACTAAATAATGTTGGCGTGCTTCAGTTTGAAAGGGGTGAATTTGAGCTTGCCCAACAAACATTTAAGGAGGCTCTAGGTGATGGTGTTTGGTTATCTTTCATCAACGAGGAAAATAAGTCTTCTGTTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCATGACCTTGAAAGCAATGGTCATCATGTAGAAGTACCTTGGGATAAAGTCACCGTACTTTTTAACCTGGCTAGGTTACTTGAACAGTTAAATGAATCTGGAACTGCCAGCATTTTGTATCGCCTTATCTTGTTCAAGTACCCAGACTATATTGATGCGTATTTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTCTATTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATGACAAGTGTCCCAATGCATTATCAATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTAAAGGCAAAAGAAACACTCCGAGCTGCTAGTGATGCAACGGATGGCAAGGACCCATATGCTACTCTCTCTCTGGGAAACTGGAACTACTTTGCAGCAGTTCGCAATGAAAAGAGAAATCCCAAGCTAGAGGCTACTCATTTGGAGAAGTCCAAAGAACTTTATACTAGAGTTCTGATTCAGCATTCTTCTAATTTATATGCTGCCAATGGTGCTGCGGTAGTGTTAGCGGAAAAAGGTCATTTTGATGTGTCAAAGGATATCTTTACACAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCCCATGTTTATTTTGCTCAGGGGAATTTTGCTTTGGCTGTGAAAATGTACCAAAACTGCTTGCGGAAGTTTTATCATAACACAGACTCTCAAATACTTCTGTATTTAGCTCGTACCCATTATGAGGCTGAACAGTGGCAAGACTGCATAAAAACACTACTGAGAGCCATCCATTTGGCACCCTCAAACTATACTTTAAGGTTTGATGCTGGGGTTGCAATGCAAAAATTTTCAGCATCAACATTACAAAAAGCAAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCTGAGCTGCAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAACCTACACATTCATGGGTTTGATGAGAAGAAAATTGACACTCACGTTGGATACTGCAACCACTTACTTTCGGCTGCTAAAGTTCATCTTGAAGCTGCTGAGCGTGAAGAGCAGCAAGTACGGCAGAGACAAGAACTTGCTCGTCAGGTTGCATTGGCAGAGGAAGCTCGACGAAAGGCGGAAGAGCAAAGGAAGTTTCAGATGGAAAGGAGAAAACAAGAAGATGAACTAAAGCGAGTGCAACAACAGGAGGAACATTTTAAGCGTGTTAAGGAGCAATGGAAGAGCAGCACTCATTCAAAACGGAGAGAAAGATCAGATGATGAAGAGGGAGGAACCGGTGAGAAGAAGAAAAGAAAAAGTGGAAAGAAGAGAAAGAAGGATAAGCATTCAAAATCACGCTATGACACGGAGGAACCGGAAGCCGATATGATGGATGAACAAGAAATGGAGGAGGAAGAAGCTGACGTATACAGAGAGGAACCTCAGACTGTGATGAATGATGAAGAGGAGGAAAATGCTCAGGGTCTTCTTGCTGCAGCTGGGCTTGAAGATTCCGATGCAGATGAGGAGATGGCTGCACCATCCTCAAGCATAGCTCGGCGAAGGCAAGCATTATCGGAATCTGATGATGATGAACCATTGCAAAGGCAGTCAAGTCCAGCAAGAGAAAATTCTGGTGACATGCAGGAGAGTGATGGAGAAATCAGAGATGTAGATAAGACACATGGAGATGATGGCAGTGATGAGGACAAACAATATTGA 3261 0.4315 MASVYIPVHNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGVRDNVPALLGQACVEFNRGRYSDSLDLYKRALQVFPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLHLDPENVEALVALAIMDLRTNEATGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRRATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGSQEVPIELLNNVGVLQFERGEFELAQQTFKEALGDGVWLSFINEENKSSVDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNESGTASILYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDPYATLSLGNWNYFAAVRNEKRNPKLEATHLEKSKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFKRVKEQWKSSTHSKRRERSDDEEGGTGEKKKRKSGKKRKKDKHSKSRYDTEEPEADMMDEQEMEEEEADVYREEPQTVMNDEEEENAQGLLAAAGLEDSDADEEMAAPSSSIARRRQALSESDDDEPLQRQSSPARENSGDMQESDGEIRDVDKTHGDDGSDEDKQY* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0268 1086 Coils Coil 801 821 - -
Vra5g0268 1086 Gene3D Tetratricopeptide repeat domain 648 836 IPR011990 GO:0005515
Vra5g0268 1086 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Vra5g0268 1086 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Vra5g0268 1086 MobiDBLite consensus disorder prediction 972 990 - -
Vra5g0268 1086 SUPERFAMILY TPR-like 523 793 IPR011990 GO:0005515
Vra5g0268 1086 Coils Coil 855 922 - -
Vra5g0268 1086 SUPERFAMILY TPR-like 648 741 IPR011990 GO:0005515
Vra5g0268 1086 MobiDBLite consensus disorder prediction 895 1086 - -
Vra5g0268 1086 SUPERFAMILY HCP-like 203 435 - -
Vra5g0268 1086 MobiDBLite consensus disorder prediction 1036 1050 - -
Vra5g0268 1086 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1060 IPR031101 GO:0006355|GO:0016570
Vra5g0268 1086 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 128 161 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 749 782 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 305 338 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 558 591 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 162 195 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 197 230 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 592 625 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 376 409 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 713 746 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 524 557 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 448 488 IPR019734 GO:0005515
Vra5g0268 1086 SMART tpr_5 342 375 IPR019734 GO:0005515
Vra5g0268 1086 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Vra5g0268 1086 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Vra5g0268 1086 Pfam Tetratricopeptide repeat 718 781 - -
Vra5g0268 1086 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Vra5g0268 1086 Gene3D Tetratricopeptide repeat domain 498 630 IPR011990 GO:0005515
Vra5g0268 1086 Gene3D Tetratricopeptide repeat domain 8 338 IPR011990 GO:0005515
Vra5g0268 1086 Gene3D Tetratricopeptide repeat domain 339 477 IPR011990 GO:0005515
Vra5g0268 1086 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Vra5g0268 1086 MobiDBLite consensus disorder prediction 895 949 - -
Vra5g0268 1086 Pfam Tetratricopeptide repeat 175 236 - -
Vra5g0268 1086 Pfam Tetratricopeptide repeat 354 412 - -
Vra5g0268 1086 SUPERFAMILY TPR-like 115 245 IPR011990 GO:0005515
Vra5g0268 1086 MobiDBLite consensus disorder prediction 1060 1086 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0268 K15176 - gmx:100794371 1974.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0268 5 2475608 2490576 Vra5g0268 5 2475608 2490576 ECH