Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0266 ATGCAAATGGCTGGAATGTCAAAGGAGGAAGTGACCGGTAGTCCTAAATGGGGTGCTTCAATTATTATGCAGACAACAGAGGATGTGGCTAGAGCTGTTGCTTCTGCTGTGAATTCCCCAAGGCCATCTGTTATATATTCATCAAAAAATGATCAAGGTGGAAATCAACTTCAAAGGCTGCAGTATCAAGTTACAAAAATGATAAAAGGATTTTCTCGCCCTTCTGAAGTTAAATATAATAATTACAATCCGGAAATACTGACAACTCAGAAGCGTCAATGGGCTGCAAACTTTCAGTTACAGTACTTGGACCATAGGTCATGGAAGGAGCCAACAAAGCTGTTTGAAAGCATGGTGGTTGTTGGACTTCATCCTAATTGTGATATTCAGGCACTGCAAGCGCAACATTTCTTAAGAAAGTCTGAAGGCCCTGGTAAATTAAGAAGTGCTCTTGGTTATCAGAATCAATCCCGTGTGGGGCCTATTCTTGAACCTCAGGTCTTATTTGTTTACCCTCCAGAAAAACAGCTGCCTCTTAACGACAAGGATCTTCTCTCTTTCTGCTTCCCAGGAGGCTTGGAGGTTAATGCTGTTGAGAGAACACCTTCCATGAGTGAATTGAATGAAATTCTTTTTGGGCAGGAACACCTTAAACAAAGGGATCTGTCTTTTGTATTTAGACTACAGGGTGCTGATAATTCAACTCTTTATGGATGCTGTGTCTTGGTTGAAGAGTTAGTGCAAAAACCCTCTGGATTGCTCTCCCTGATTTCTGATAAACGGTCAAGCTATTCTCCTCTGAAACGCGAACGGCATATATTAACTACACAAAGATGTTACTGCATTCTCTCAAGGCTCCCATTTTTTGAATTGCACTTTGGTGTTTTGAACAGCATCTTCATGCAAGAACGACTAGATCGCTTGACGAAAAGCATTGGAGATTTAGATTTAGAATATGTTGAAGATAGCTGTGGGCAAGACAATTTTGGGGAAGATTCAGAATGCATGTTGGTGAATGATAGATTAGAAGATAGACATGATGACAGTCCAACGGTTTCCCAATCAAGCCTAAGAAATTCCTCACTGGAAATCATTGAGGGTGATAGTAATTATCCCAAGAAAGAAATAGTTAATGTGGAGCTGCATATATTTAATGATAGAGTCAATGATGGCAATGATGTGCCTTGTGATCTTGCGAAGGATAAAAAAACTGTTAATGAGGAATCTGCCCCTACGAATGCTGAGGATTGTGATTTGTACGGAGATGCTTTTGTAACAAATAAACAGTCAGAAGATAGGCGTTTACCCAATGCTATTCTACCACTCTTGCGGTATTGCCAGTATGAAAGCTCTGAATCTTCCTGCAGTTTTCAGGGTTCTCCTTGTGATGACAGGAATTTCAGGAGTGACGCCGATGATACTGAGACAGAAGAAGCTTCATTCTCTGGTCAAGAGGATTTAAATGACCTAAATGGTATTCTTGAGTGGGCTAAGGCAAATAACTGTGGATTATTACAGATTATAAGTGAGTATTATTGCTTGAGTTGCCCTGCAAGGGGCACATCAATTAGATTTCATCCTTTGGATCACCTGCATCCCTTAGAATATCATAGACCAGATGAGGCAATTCTACATCTTGCCGGTTCAATTGTTGATTTGAAATCTTTCAATGCAGGTCTGGAATTTGCAGAGGCTCATAATTCTCTTCTGGCTGAGGAGGAGGCAACTGCATTATCTACATGGGCTGTTGGGTGCATGTGTGGTACCTTGAGACTTGAAAATGTGTTAGCATTTTTTGCAGGAGCTTTACTGGAGAAGCAGATAGTCTTTGTCTGTTCTAATTTGGGAATCCTATCTGCGTCAGTTTTATCAGTTATTTCACTAATCCGGCCCTACCAATGGCAAAGCTTGCTAATGCCGGTTCTACCAAATGACATGCTTGAGTTTCTGGATGCACCTGTGCCTTACATAGTTGGTATCAAAAACAAGACCAGTGAAGTTCAGTCAAAGTTAACTAATAACGTTATCCTGGTTGACGTCAACAGGAATCAGGTGAGGTCATCAACAATACCTCAACTGCCAAGGCAGAAAGAGTTGATCGCTTCTTTGCGCCCTTATCATGCAACTCTGGTGGGAGAAAGTTACTTGGGTAGGAGAAGGCCAGTATATGAATGCACAGAAGTGCAGGTAGAAGCTGCCAAGGGGTTCTTATCGGTGTTAAGGACTTATTTGGATTCCCTTTGCCATAACATTCGTTCTCATACAATAACCAATGTACAATCCAATGATGATAAGGTATCCTTGCTTTTGAAGGAGAGTTTCATTGACTCGTTTCCTTATCGTGATAGGCCTTTCATGAAGCTTTTTGTGGATACGCAGCTCTTCTCTGTGCATACAGATCTTGTTCTCTCTTTCTTTCAAAAGGAATAG 2430 0.4103 MQMAGMSKEEVTGSPKWGASIIMQTTEDVARAVASAVNSPRPSVIYSSKNDQGGNQLQRLQYQVTKMIKGFSRPSEVKYNNYNPEILTTQKRQWAANFQLQYLDHRSWKEPTKLFESMVVVGLHPNCDIQALQAQHFLRKSEGPGKLRSALGYQNQSRVGPILEPQVLFVYPPEKQLPLNDKDLLSFCFPGGLEVNAVERTPSMSELNEILFGQEHLKQRDLSFVFRLQGADNSTLYGCCVLVEELVQKPSGLLSLISDKRSSYSPLKRERHILTTQRCYCILSRLPFFELHFGVLNSIFMQERLDRLTKSIGDLDLEYVEDSCGQDNFGEDSECMLVNDRLEDRHDDSPTVSQSSLRNSSLEIIEGDSNYPKKEIVNVELHIFNDRVNDGNDVPCDLAKDKKTVNEESAPTNAEDCDLYGDAFVTNKQSEDRRLPNAILPLLRYCQYESSESSCSFQGSPCDDRNFRSDADDTETEEASFSGQEDLNDLNGILEWAKANNCGLLQIISEYYCLSCPARGTSIRFHPLDHLHPLEYHRPDEAILHLAGSIVDLKSFNAGLEFAEAHNSLLAEEEATALSTWAVGCMCGTLRLENVLAFFAGALLEKQIVFVCSNLGILSASVLSVISLIRPYQWQSLLMPVLPNDMLEFLDAPVPYIVGIKNKTSEVQSKLTNNVILVDVNRNQVRSSTIPQLPRQKELIASLRPYHATLVGESYLGRRRPVYECTEVQVEAAKGFLSVLRTYLDSLCHNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKLFVDTQLFSVHTDLVLSFFQKE* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0266 809 Pfam uDENN domain 165 242 IPR005113 -
Vra5g0266 809 PANTHER DENN (AEX-3) DOMAIN PROTEIN 3 809 - -
Vra5g0266 809 ProSiteProfiles Tripartite DENN domain profile. 148 809 IPR037516 -
Vra5g0266 809 Pfam DENN (AEX-3) domain 568 682 IPR001194 -
Vra5g0266 809 SMART DENN_cls 275 683 IPR001194 -
Vra5g0266 809 Gene3D - 103 312 - -
Vra5g0266 809 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 3 809 - -
Vra5g0266 809 SMART uDENN_cls 111 244 IPR005113 -
Vra5g0266 809 Gene3D - 578 745 IPR043153 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0266 Vra-Chr5 2452183 2462349 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0266 - - var:108331642 1580.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0266 5 2452183 2462349 Vra5g0266 5 2452183 2462349 ECH
Vra7g2614 7 46383560 46398664 Vra5g0266 5 2452183 2462349 PCT