Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0260 ATGGTGGCCATGGCCAGCACTGCCAATAGAAAAATCGAAACATACGAAGAGTTCGCGAAAGTTCACGCGCTTCTACTTGCGGCGTCTGGATTGCCTGAGTGCCTCCACCGGCGCCTCTTTGAGAAACTCTCCGGCGAGACATTTGACGGCGGCAACCACTTCCAGATCGAGCCATGCGAGGGCGACCGTCAACGGCGCCTTGTTCTCACGTCGGCGTCGATGGAAGCGGACTCCGAAGTCTTCCTCGTTGATCACGCATGGACTTTCAGACTCTCCGACGCATATAAGCAGCTGCGTGAGGTTCCAGGATTGGCTGAGAGGATGGGTTCTCTGATGTGTGTGGATGTTGATGTGAGTTCAGATGATGGTGAAGATGAAGGGAACGGTGAGCTTGGTGTTGAGGAAACTTTGGAGAGGGAAGTTGGTGAGGCAAAGGAGAAAGGAAATGGGACGTTACGGTGGTTGGAGCTTGAAGGGCTTAACATCGATGATGCCATGCTTGTGTCTCTAGCCTTGCCAACTAGGTTTCCGGATTTAGTGGCACTTAGCCTGCTTGGAAACAAGCTCAACAGTGCCGAAGTGGTTGTTCAGGAAGTTATCAAACTTCAGCATCTCAAAGGAATATGGTTCAACAATAACCCAGTTCTCAAAAATTGTGATGGTAAGCTTGCAGGTTTGATTCTTAAGGAGTTGCCTGAACTTGAAATTTATAATTCAAGTTTCACAAGCAATTTTGGGGAGTGGGCGTTGGGCTTTTGTGCAGGGATATACGGAAAGGATAACCCTGGAAATGCTGATCACACTTCACTGTACACTGTGTCTTCTCTTGACCTTTCAAATAGGAACATTCACAATTTAAAGAATAAGGCATTTACACCCATTTGTTTGCCATCTCTTACGTACTTTAACATTCAAGGAAATCCATTGGAGCAGAACTCAGTTGGTGACTTGTTAGATCTGCTGCAGAGATTCCCTTGCCTGCGTTCATTGGAGGTTGATATTCCAGGTCCACTGGGACGAAGGGCCATTGATATTTTGGAATCTCTTCCAAACATTTCTGAGCTAAATGGTATCGATGCATCCAAAATATTAGAAACAGGAAAGCATGTTATTGATTCAATGCTTCTTCCTCGTCTTCCTGAATGGACTCCTGATGAGCCGCTTGCTGAGCGTATTATAAATGCAATGTGGCAACATCTAATGACATATAGACTTGCAGATGAAGAAAAGTTAGACGAAACATCAGTCTGGTATGTGATGGATGAGCTAGGTTCAGCTTTGCGGCATAGTGATGAGCCAAATTTCAGAGTGGCACCATTTTTGTTCATGCCAGAGGGCAATCTAGCATCAGCTGTGAGCTTTTCTATTCTATGGCCAACACAGAATGTTCAGAAAGGTGATGAGTGCACGCGCGATTTTCTTCTTGGTATTGGGGAAGATAAGCAACGTTCTGCCAGGCTTACTGCCTGGTTCCACACTCCAGAAAACTACTTTATCCATGCATATGAGAAGCACAGTCAAAAATTGTTCTCCACAAGTTTAATGCCTCCCACCTCTCAGTATTCTGGGACCCAAAGTATTCATCGACAGGGTGGGCGTCCATTGCTTGTTTACACAGATATACCTCACGTAGAGGAATACTTGACACATCCTGAGTTTGCAATCACAAATGAACCAAAAGATGCAGATATAATATGGACAAGTATGCAGGTAGATGAGGATATGAAGAAAGCTACCGGAATAACGGATCAACAATACATTAATCAATTTCCTTTTGAAGCATGTCTTGTTATGAAGCATCATTTGGCAGAGACAATTCAAACGGCACATGGATCTCCCCGATGGTTACAGCCTACTTATAATCTCGAAACACACCTATCTCAACTTATTGGTGACTATTGTGTTCGCAAAAGGGAAGGACTAGACAATCTTTGGATCTTAAAACCCTGGAACATGGCCCGAACCATAGATACTACTGTAACTGATAATTTGCCTGCAATAATCCGGCTCATGGAAACTGGTCCAAAAATTTGCCAGAAGTATATTGAACAGCCTGCATTGTTCCAGGGGAAAAAGTTTGATCTCCGTTACATAGTACTGGTTCGGAGCATGCATCCTCTGGAGATATTCCTGTCAGATTGTTTCTGGGTTAGGATTGCCAACAACCAATATTCTTTGGCCAGAAGTAGTTTGTTTGAGTATGAAACTCATTTCACTGTTATGAACTATCGCGGAACCATAAATCATAAGAATGCCAGCGAATTTGTGAGGGAATTTGAGGAAGAACATCAAGTTAAATGGTTGGATATACACACAAGAGTAAGGAAAATGATTCGTTCAGTATTTGAGGCAGCTGCTGTTGCTCATCCTGAGATGCACAGTCCAACATCAAGGGCAATGTATGGTGTAGATGTCATGTTGGACAGCTCTTTCCAACCCAAGTTACTAGAGGTAACTTACTGCCCTGATTGTACAAGAGCTTGCAAATATGACATGGATATTGTGGTTGGAGAGGGAGGCGTTGCTAAAGGTTGTGATTTCTTCAATAATGTGTTCAGTTGTCTCTTTTTGAATGAAACTTCACATGTGAGTCAATTGTAA 2601 0.4371 MVAMASTANRKIETYEEFAKVHALLLAASGLPECLHRRLFEKLSGETFDGGNHFQIEPCEGDRQRRLVLTSASMEADSEVFLVDHAWTFRLSDAYKQLREVPGLAERMGSLMCVDVDVSSDDGEDEGNGELGVEETLEREVGEAKEKGNGTLRWLELEGLNIDDAMLVSLALPTRFPDLVALSLLGNKLNSAEVVVQEVIKLQHLKGIWFNNNPVLKNCDGKLAGLILKELPELEIYNSSFTSNFGEWALGFCAGIYGKDNPGNADHTSLYTVSSLDLSNRNIHNLKNKAFTPICLPSLTYFNIQGNPLEQNSVGDLLDLLQRFPCLRSLEVDIPGPLGRRAIDILESLPNISELNGIDASKILETGKHVIDSMLLPRLPEWTPDEPLAERIINAMWQHLMTYRLADEEKLDETSVWYVMDELGSALRHSDEPNFRVAPFLFMPEGNLASAVSFSILWPTQNVQKGDECTRDFLLGIGEDKQRSARLTAWFHTPENYFIHAYEKHSQKLFSTSLMPPTSQYSGTQSIHRQGGRPLLVYTDIPHVEEYLTHPEFAITNEPKDADIIWTSMQVDEDMKKATGITDQQYINQFPFEACLVMKHHLAETIQTAHGSPRWLQPTYNLETHLSQLIGDYCVRKREGLDNLWILKPWNMARTIDTTVTDNLPAIIRLMETGPKICQKYIEQPALFQGKKFDLRYIVLVRSMHPLEIFLSDCFWVRIANNQYSLARSSLFEYETHFTVMNYRGTINHKNASEFVREFEEEHQVKWLDIHTRVRKMIRSVFEAAAVAHPEMHSPTSRAMYGVDVMLDSSFQPKLLEVTYCPDCTRACKYDMDIVVGEGGVAKGCDFFNNVFSCLFLNETSHVSQL* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0260 866 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 642 823 - -
Vra5g0260 866 ProSiteProfiles TTL domain profile. 530 858 IPR004344 GO:0036211
Vra5g0260 866 Pfam Tubulin-tyrosine ligase family 584 834 IPR004344 GO:0036211
Vra5g0260 866 Gene3D Ribonuclease Inhibitor 132 244 IPR032675 -
Vra5g0260 866 PANTHER TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 9 865 IPR027749 -
Vra5g0260 866 SUPERFAMILY RNI-like 151 356 - -
Vra5g0260 866 Gene3D Ribonuclease Inhibitor 255 362 IPR032675 -
Vra5g0260 866 Gene3D - 660 839 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0260 K16609 - gmx:100809212 1539.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0260 5 2391549 2397552 Vra5g0260 5 2391549 2397552 ECH