Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0254 ATGGGTTCTGAAAGCAAAAGCTTCGACTTTTTCAAGGAGATCGGGTTGGCTTCCTCCAATATAGGCTCTTATGTTAATGGCCAATGGAAAGCCTCTGGTTCCACTGTCACTTCTGTTAACCCTTCTAACAATCAGACCATAGCTGAAGTGACTGAAGCTACTTTGCAAGATTATGAGGAGGGTTTGCAAGCTTGTGGTGAAGCAGCAAAGACATGGATGACGATTCCGGCACCAAAGAGGGGTGAGATTGTGAGACAGATTGGTGAAGCTTTGAGGGCCAAATTGGATCCTCTGGGTAGGCTGGTGTCTCTTGAGATGGGAAAGATTCTTGCAGAAGGAATTGGGGAAGTTCAGGAAATTATTGATATGTGTGATTACGCTGTTGGGCTAAGCCGACAATTGAATGGATCAATAATACCATCAGAGCGTCCAGATCACATGATGTTTGAGGTATGGAACCCCCTAGGAATAGTTGGTGTAATCACCGCTTTCAACTTTCCATGCGCGGTTCTAGGATGGAATGCTTGCATTGCGTTGGTCTGTGGCAACTGTGTTGTGTGGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGTAGCTGAAGTTCTTGAGAAGAACAACTTACCCGGTGCAATTTTCACATCTTTCTGTGGAGGTGCTGACATTGGTCAGGCAATAGCAAAAGACACACGCATTCCCCTGGTTTCATTTACTGGAAGTACAAAGGTCGGCTTGATGGTCCAGCAAACAGTGAATGAGAGATTTGGCAAGTGCTTGCTTGAGTTGAGTGGAAACAATGCAATAATAGTCATGGATGATGCAGACATTAAATTGGCCGTTCGTTCTATTTTGTTTGCTGCTGTGGGTACTGCTGGTCAGCGGTGTACAACCTGCCGGAGACTGTTTTTGCACGAGAGTATTTACACAAATGTACTAGACCAACTTGTTGGACTCTACAAACAAGTCAAGATAGGGAACCCCTTGGAGAAGGGGACTCTAGTTGGGCCATTGCATACTCGTACTTCGGTGGAAAACTTTCAGAAGGGTATTTCCGTCATAAAATCCCAGGGAGGGAAGATCTTAACAGGTGGATCTGTATTAGAGTCAGAAGGAAATTTTGTACAACCAACAATTGTTGAGATTTCTCCAGATGCTCCTGTAGTTAAAGAAGAATTGTTTGGTCCAGTTCTTTATGTCATGAAATTTCAGACTCTGGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGTAGTTCAATCTTTACACAAAGACCTGGAACTATATTCAAATGGATCGGGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAATATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGGGAAAAGGCAACTGGTGGTGGTCGTGAAGCAGGAAGTGACTCATGGAAGCAATACATGCGTCGTTCTACATGTACCATCAACTATGGAAGTGAACTGCCATTGGCTCAGGGAATTAACTTTGGCTAG 1527 0.4414 MGSESKSFDFFKEIGLASSNIGSYVNGQWKASGSTVTSVNPSNNQTIAEVTEATLQDYEEGLQACGEAAKTWMTIPAPKRGEIVRQIGEALRAKLDPLGRLVSLEMGKILAEGIGEVQEIIDMCDYAVGLSRQLNGSIIPSERPDHMMFEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIAVTKLVAEVLEKNNLPGAIFTSFCGGADIGQAIAKDTRIPLVSFTGSTKVGLMVQQTVNERFGKCLLELSGNNAIIVMDDADIKLAVRSILFAAVGTAGQRCTTCRRLFLHESIYTNVLDQLVGLYKQVKIGNPLEKGTLVGPLHTRTSVENFQKGISVIKSQGGKILTGGSVLESEGNFVQPTIVEISPDAPVVKEELFGPVLYVMKFQTLEEAIALNNSVPQGLSSSIFTQRPGTIFKWIGPRGSDCGIVNANIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRSTCTINYGSELPLAQGINFG* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0254 508 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 20 505 IPR044638 GO:0004029
Vra5g0254 508 CDD ALDH_F7_AASADH 24 496 - -
Vra5g0254 508 SUPERFAMILY ALDH-like 19 497 IPR016161 GO:0016491
Vra5g0254 508 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
Vra5g0254 508 Pfam Aldehyde dehydrogenase family 32 488 IPR015590 GO:0016491
Vra5g0254 508 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 20 505 - -
Vra5g0254 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 35 485 IPR016162 GO:0016491
Vra5g0254 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 269 460 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0254 Vra-Chr5 2316256 2322440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0254 1 508 Acyl Lipid Metabolism Gene Families AT1G54100 80.906 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0254 K14085 - gmx:100811186 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0254 5 2316256 2322440 Vra5g0254 5 2316256 2322440 ECH