Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0240 ATGGCTTCGATGAAAGTCTTTGTGTTCACTTTTTTTCTAAGTTTCTTGTTTTACAGTATCAATGGTGTTGAAGTGAGTCATGATGGAAGAGCCATCAAAATTGATGGAAAAAGGAGAGTGTTGATATCTGGATCCATTCACTATCCTAGAAGTACACCAGGGATGTGGCCTGATTTGATAAAGAAAGCAAAAGAAGGAGGCTTGGATGCTATTGAAACATACGTGTTTTGGAATGCACATGAACCTGTTCGTCGTGAATATGATTTTAATGGCAGAAACGATCTCATTAGGTTTCTAAAGACCATTCAAGACGAAGGTCTTTATGCTGTTCTTCGTATTGGTCCCTATGTCTGTGCTGAATGGAATTATGGAGGGATTCCTGTGTGGGTTTACAATCTACCTGGTGTCCAGATTCGTACCTCAAATCAAGTATACATGAATGAAATGCAAAATTTCACTACTCTCATTGTGGACATGGTCAGAAAGGAGAAATTATTTGCCTCTCAAGGAGGTCCTATAATTATTTCTCAGATTGAGAATGAATATGGGAATGTGATGTCGAGTTATGGAGATGCTGGAAAAGCTTATATAGATTGGTGTGCAAATATGGCTGAGTCCTTCAACATTGATGTTCCATGGATCATGTGCCAACAATCTGATGCCCCTCAACCAATGATCAATACTTGCAATGGTTGGTATTGTCACGACTTCAAGCCTAATAACCCCAACAGTCCTAAGATGTGGACTGAAAATTGGGTTGGATGGTTTAAGAATTGGGGTGGCAAAGATCCACATAGAACTACAGAAGATGTTGCCTATTCTGTGGCTAGGTTTTTTCAAACAGGTGGCACGTTCCAAAACTACTACATGTATCATGGTGGGACTAACTTTGGTAGAACAGCTGGAGGTCCATACATTACTACTACATATGATTACGATGCTCCTCTAGATGAATTCGGAAACATAGCACAACCAAAATGGGGTCACCTCAAAGAACTTCATAGGATTCTGAAATCAATGGAGAATAGTCTAACTAATTATGGAAATGTATCTGAAGTTGATTTGGGTCAATCTGTTAAGGCTACTATGTATATGGCAAATGATTCATCAAGTTGCTTCTTGACTAACACCAACACCACCACTGATGCCATAGTAACATTTAGAGGAAACAAATATAATGTTCCTGCTTGGTCGGTCAGTCTTCTTCCTGATTGTCAAACCGAAGAGTATAACACAGCCAAGGTGAATGTCCAAACCTCTGTCATGATAAAGGGTAAAAACAAAGCAGAAGATGAACCAATAGCTTTGAATTGGGTGTGGAGAGCTGAGAATATTGATGATGCTCTCCTTGGCAAAGGAAACTTCTCTACAAATGGACTTGTTGATCAAAAAATAATTGCTTCTGATAGCAGTGATTATGTTTGGTACATGACAAGACTTGATCTCGATCAAAGTGATCCAGTTTTTTCAGATAATATGTCTCTTAGAATCAATGGCACTGGTCACGTAATCCATGCATTCGTTAATGGAGAACATATTGGTTCCCATTGGGCTACATATGGTGTCCGCAGTTATGAATTTGAGACTAAAATTAAGTTGATGCAAGGAAAGAATATTATCAGTCTGCTCAGTGTTACAGTTGGACTACAGAACTACGGACCAAACTATGATAAATGGAGCGCTGGTCTCGTTGGGCCCATCAGTGTAGTCAGCAAAAAAGACGATGAAACTGTGGTCAAAGATCTATCCTTAAACAAATGGTCTTACAAGGTTGGGTTGCATGGTTGGGACAACAAATTCTTCAGTGAAGACTCTCCCTATGCTTCTGCTTCCAAATGGGAATCTGAGTACTTACCAACAAATAGAATGTTGACTTGGTACAAGACCACTTTTAAAGCTCCTCTTGGATCAGAGCCTGTTGTCGTGGATATGCAAGGAATGGGAAAAGGGTTTGCTTGGGTGAATGGCCATAATATTGGTCGCACATGGCCTAGTTATGACGCAAGTGAGGATGGTTGCAGTAATGATCCTTGTGACTACCGTGGTGAATATAGTGACAGAAAATGCGTTACCAATTGTGGACAATCCACACAAAGATGGTACCATGTTCCTCGTTCCTTTATCGAAGATGGTGTAAACACATTGGTTTTATTTGAGGAAATTGGTGGCAATCCATCTCTGGTGAATTTCCAAACCGTTTTTGTTGGGTCTGCTTGTGGAAACACTCATGAGAACAAGAGTTTGGAATTGTCTTGCCATGGACGTCCCATTTCGGATATAAAGTTTGCAAGTTTTGGCAATCCAGAAGGTGAATGTGGTACATTTAGACAAGGAAGTTGTGAAAGCAAAAATGATGCTTTGTCCATAGTACAGAATGCATGTGTGGGCAAGGAATCGTGCATCATTGATGTTTCAGAAAAAACTTTCGGACCAACAACTTGTGGAAACATAGTGAAGAGGCTCGCCGTCGAAGCAGTTTGTTAG 2484 0.4014 MASMKVFVFTFFLSFLFYSINGVEVSHDGRAIKIDGKRRVLISGSIHYPRSTPGMWPDLIKKAKEGGLDAIETYVFWNAHEPVRREYDFNGRNDLIRFLKTIQDEGLYAVLRIGPYVCAEWNYGGIPVWVYNLPGVQIRTSNQVYMNEMQNFTTLIVDMVRKEKLFASQGGPIIISQIENEYGNVMSSYGDAGKAYIDWCANMAESFNIDVPWIMCQQSDAPQPMINTCNGWYCHDFKPNNPNSPKMWTENWVGWFKNWGGKDPHRTTEDVAYSVARFFQTGGTFQNYYMYHGGTNFGRTAGGPYITTTYDYDAPLDEFGNIAQPKWGHLKELHRILKSMENSLTNYGNVSEVDLGQSVKATMYMANDSSSCFLTNTNTTTDAIVTFRGNKYNVPAWSVSLLPDCQTEEYNTAKVNVQTSVMIKGKNKAEDEPIALNWVWRAENIDDALLGKGNFSTNGLVDQKIIASDSSDYVWYMTRLDLDQSDPVFSDNMSLRINGTGHVIHAFVNGEHIGSHWATYGVRSYEFETKIKLMQGKNIISLLSVTVGLQNYGPNYDKWSAGLVGPISVVSKKDDETVVKDLSLNKWSYKVGLHGWDNKFFSEDSPYASASKWESEYLPTNRMLTWYKTTFKAPLGSEPVVVDMQGMGKGFAWVNGHNIGRTWPSYDASEDGCSNDPCDYRGEYSDRKCVTNCGQSTQRWYHVPRSFIEDGVNTLVLFEEIGGNPSLVNFQTVFVGSACGNTHENKSLELSCHGRPISDIKFASFGNPEGECGTFRQGSCESKNDALSIVQNACVGKESCIIDVSEKTFGPTTCGNIVKRLAVEAVC* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0240 827 PANTHER BETA-GALACTOSIDASE 7 18 818 - -
Vra5g0240 827 ProSiteProfiles SUEL-type lectin domain profile. 742 827 IPR000922 GO:0030246
Vra5g0240 827 Pfam Glycosyl hydrolases family 35 33 335 IPR031330 -
Vra5g0240 827 Pfam Beta-sandwich domain in beta galactosidase 347 415 IPR041392 -
Vra5g0240 827 PANTHER BETA-GALACTOSIDASE RELATED 18 818 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 Gene3D - 596 736 - -
Vra5g0240 827 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Vra5g0240 827 Gene3D - 391 572 - -
Vra5g0240 827 Gene3D - 737 827 IPR043159 -
Vra5g0240 827 SUPERFAMILY Galactose-binding domain-like 399 570 IPR008979 -
Vra5g0240 827 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 PRINTS Glycosyl hydrolase family 35 signature 622 636 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 PRINTS Glycosyl hydrolase family 35 signature 649 665 IPR001944 GO:0004553|GO:0005975
Vra5g0240 827 SUPERFAMILY (Trans)glycosidases 21 340 IPR017853 -
Vra5g0240 827 Pfam Beta-galactosidase jelly roll domain 470 543 IPR025300 -
Vra5g0240 827 Pfam Galactose binding lectin domain 750 827 IPR000922 GO:0030246
Vra5g0240 827 SUPERFAMILY Galactose-binding domain-like 584 745 IPR008979 -
Vra5g0240 827 Gene3D Glycosidases 23 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0240 Vra-Chr5 2156908 2161110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0240 1 827 Glycoside Hydrolase AT1G31740 62.847 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0240 - - gmx:100789201 1354.35