Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0225 ATGGCAAAGAAAATTTTTCCCATGGGTTTCTCTCTTGTTTGCTTAACCTTAATCCAGTTCATAGCTTCACTGAATTTCAGCACATCCCATAGCGAAATTAGCACTACACCCAAGGCTTTTTTCATATTTGGCGACTCCACTGTAGATTCTGGCAACAACAACTTCATTGATACAATTCCAGAGAACAAAGCGGATTACAAACCATATGGACTCAACGCTTTTTCTCATGAACCAACGGGACGATTCTCAGATGGTCGTGTCATTGTAGATTTTATAGCTGAATATGCTGAACTTCCACTAATTCCTCCTTTTTTGCAACCAAATGCTGATTTCAGCAACGGTGTCAACTTTGCTTCTGGTGGGGCCGGTGTTCTTTCTGAAACCAATAATAAACTGGTGATTGATTTTCAAACACAATTACGTCACTTTGAAGAAGTGAGGAACTTGTTATCAGAAAAGCTTGGAGAGAAGAAAGCAAAGGAATTGATCTCAGAAGCAATTTATTTCATTAGCATAGGAAGCAACGATTATATGGGTGGTTATCTGGCCGATCGCAAAATGCAAGCAAGCTACAATCCTGAGCAATATGTTGGAATGGTCATTGGAAATTTGACACAGGCCATCCAAATTCTATATGAGAAAGGAGCAAGAAAATTTGGGTTCTTGAGTTTGTCTCCTTTGGGTTGCTTGCCAGCTCTTAGATCTCTAAACCCTGAAAGCGACAAAGGTGGTTGCTTTGAGGCAGCTTCTGCTCTTGGTCTAGCACATAATAATGCTTTGAGTACTGTTCTCACAAGCCTGAAAGAAGTCCTTGAAGGGTTCATGTACAGCAACTCTAATTTCTATGACTGGCTTCTAGATAGAATAGATAACCCCACAGATTATGGTTTTAAAGATGGAGTTAATGCTTGCTGTGGAAGTGGACCATACGGTGGCATCTTCAGCTGTGGGGACACTACGAAAGATACAGAGTTCAGCTTATGTGACCATGCTGGTGATCATGTATGGTGGGATTCTTTTCATCCAACACAGAAGATTCATCAGCAATTCGCCAAGGCATTATGGGATGGACCACCCTCCTCTGTAGGGCCATACAATTTGAAACAACTCTTCTCCAACAACGAGATCACGCTCACTATAGCTGATGTAGTAGATGCCCCAGAAAACCAGCAACACAGTTTCAGTATCTGA 1191 0.4148 MAKKIFPMGFSLVCLTLIQFIASLNFSTSHSEISTTPKAFFIFGDSTVDSGNNNFIDTIPENKADYKPYGLNAFSHEPTGRFSDGRVIVDFIAEYAELPLIPPFLQPNADFSNGVNFASGGAGVLSETNNKLVIDFQTQLRHFEEVRNLLSEKLGEKKAKELISEAIYFISIGSNDYMGGYLADRKMQASYNPEQYVGMVIGNLTQAIQILYEKGARKFGFLSLSPLGCLPALRSLNPESDKGGCFEAASALGLAHNNALSTVLTSLKEVLEGFMYSNSNFYDWLLDRIDNPTDYGFKDGVNACCGSGPYGGIFSCGDTTKDTEFSLCDHAGDHVWWDSFHPTQKIHQQFAKALWDGPPSSVGPYNLKQLFSNNEITLTIADVVDAPENQQHSFSI* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0225 396 CDD SGNH_plant_lipase_like 39 358 IPR035669 -
Vra5g0225 396 Gene3D SGNH hydrolase 27 357 IPR036514 -
Vra5g0225 396 PANTHER - 17 377 - -
Vra5g0225 396 SUPERFAMILY SGNH hydrolase 40 356 - -
Vra5g0225 396 Pfam GDSL-like Lipase/Acylhydrolase 41 353 IPR001087 GO:0016788
Vra5g0225 396 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 17 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0225 Vra-Chr5 1960891 1962757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0225 39 357 Acyl Lipid Metabolism Gene Families AT4G10950 32.923 1.96e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0225 - - gmx:100801228 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0225 5 1960891 1962757 Vra5g0225 5 1960891 1962757 ECH