Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0206 ATGGCAGCATCATTGGCATGCCTTGGTGGGAGTGGTTTATATACACAGAGCAATAAAATAATTCTTGGCAAGGAAGTCAATGGAAGACATCTCTTCGCATCTCATAGACTTTCATCACTGAATAAGGAATCAAAGACACTATCAGTGAAGGCATCATTGGATCGAAGAAAACATGAAGGGAGAAGAGGATTTTTGAAATTGTTGAATGTCGGAGTTGGCTTACCGGTACTATTAGGAAGTGGGAAAGCTTACGCTGATGAACAAGGGGCATCCTCCTCCAGAATGTCTTATTCTAGGTTTCTTGAGTATTTGGACAAGGATAGAGTTAAAAAAGTGGATCTGTATGAGAATGGAACCTCGGCTATTGTGGAGGCTGTATCTCCTGAGTTGGGCAATAGAGTGCAGCGAGTGCGTGTTCAACTTCCCGGACTTAGCCAAGAGCTCCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCCGCACATAATGGCCAAGAAGAGACAGGTTCTCCGTTAGTGAACCTGATTGGGAACCTGGCTTTCCCTCTAATTTTGATTGGAGGATTGTTCTTTCTGTCAAGACGATCATCAGGAGGAGTGGGAGGTCCTGGTGGATCAGGCTTTCCTCTGGCTTTTGGTCAATCCAAAGCCAAGTTTCAAATGGAGCCTAATACTGGAGTGACATTTGACGATGTTGCTGGAGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAATTTCTTAAAAAGCCTGAGAGATTCACCGCTGTTGGGGCTCGCATACCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGAACTGGGAAGACACTTTTAGCAAAGGCTATTGCAGGTGAAGCAGGTGTCCCATTTTTTTCAATCTCAGGTTCTGAGTTTGTGGAGATGTTTGTTGGTGTTGGTGCTTCCCGAGTCCGCGATTTATTCAAGAAGGCCAAAGAGAATGCTCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGGGGTACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACTGGTATCATTGTCATTGCCGCTACTAACAGGGCTGACATTCTTGATTCTGCATTGTTAAGACCAGGCCGATTTGATAGACAGGTGACAGTTGATGTTCCAGATATTCGGGGAAGGACTGAAATTTTAAAGGTTCATGGTTCCAATAAAAAGTTTGAAGCTGATGTTTCACTTGAGGTAATTGCTATGAGAACACCTGGTTTTAGTGGAGCTGATCTGGCAAACCTGCTGAATGAAGCTGCTATACTAGCTGGTCGGCGAGGAAAGGCAGCTATTTCATCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGCTTAGTGGCTTATCATGAAGTTGGGCATGCTATTTGTGGAACTTTGACTCCTGGTCATGATCCTGTGCAAAAGGTTACCTTGGTTCCTCGTGGGCAAGCTCGGGGTCTTACCTGGTTTATTCCTGCTGATGACCCAACGCTGATCTCCAAGCAACAACTCTTCGCAAGAATTGTTGGTGGACTAGGTGGCAGAGCAGCAGAGGAAGTTATTTTTGGTGAGCCCGAGGTTACAACTGGAGCAGCTGGTGATCTGCAGCAAATAACCAGTTTGGCCAAACAGATGGTAACCACATTCGGAATGTCTGATATTGGTCCTTGGTCACTCATGGACTCATCGGCTCAAAGTGCAGATGTGATCATGAGAATGATGGCAAGAAACTCAATGTCTGAAAAGCTTGCCGAAGACATTGATGCTGCTATCAAGAGAATTTCAGATGAAGCATATGAAATTGCATTGAGCCAAATAAGGAACAACCGAGAAGCAATTGATAAGATTGTGGAAGTTCTACTGGAGAAGGAGACAATGAGTGGAGATGAATTCCGAGCTCTCCTGTCCGAGTTTGTTGAAATTCCTGCTGAAAATCGGGTCCCTCCTTCGATACCCTCACCAATTACTGTTTGA 2079 0.444 MAASLACLGGSGLYTQSNKIILGKEVNGRHLFASHRLSSLNKESKTLSVKASLDRRKHEGRRGFLKLLNVGVGLPVLLGSGKAYADEQGASSSRMSYSRFLEYLDKDRVKKVDLYENGTSAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNGQEETGSPLVNLIGNLAFPLILIGGLFFLSRRSSGGVGGPGGSGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFEADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMDSSAQSADVIMRMMARNSMSEKLAEDIDAAIKRISDEAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRALLSEFVEIPAENRVPPSIPSPITV* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0206 692 Gene3D Peptidase M41 476 675 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra5g0206 692 Pfam ATPase family associated with various cellular activities (AAA) 266 397 IPR003959 GO:0005524|GO:0016887
Vra5g0206 692 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 175 670 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra5g0206 692 CDD AAA 241 398 - -
Vra5g0206 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 469 IPR027417 -
Vra5g0206 692 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 16 681 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra5g0206 692 SMART AAA_5 262 401 IPR003593 -
Vra5g0206 692 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 5 682 - -
Vra5g0206 692 Pfam AAA+ lid domain 421 464 IPR041569 -
Vra5g0206 692 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Vra5g0206 692 PANTHER METALLOPROTEASE M41 FTSH 5 682 - -
Vra5g0206 692 Gene3D - 89 168 - -
Vra5g0206 692 Pfam Peptidase family M41 480 668 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra5g0206 692 Gene3D - 400 475 - -
Vra5g0206 692 Pfam FtsH Extracellular 83 160 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Vra5g0206 692 Gene3D - 217 399 IPR027417 -
Vra5g0206 692 SUPERFAMILY FtsH protease domain-like 481 677 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0206 Vra-Chr5 1708320 1712267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0206 220 670 Miscellaneous Gene Families AT5G53170 50.220 7.31e-138 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0206 K03798 - gmx:100795567 1207.97