Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0195 ATGGAAGAAGAAGAGCAAAAAGTTATGGAAAAGGGTTGCAAGGAAGCTCCTGTTCGAATTTATTCTGACGGGATTTATGATCTCTTTCACTTCGGCCATGCCCGTTCTCTTGAGCAAGCTAAGAAACTGTTTCCAAACACTTATCTCCTTGTTGGATGCTGCAATGATGAGATCACCCATAAGTATAAGGGCAAAACTGTTATGACTGAGAAGGAACGCTACGAGTCTCTTCGCCACTGCAGGTGGGTTGATGAAGTTATTCCAGATGCGCCATGGGTAATCACCAAGGAGTTCCTTGACAAGCATCAAATTGACTATGTGGCACATGATAGTCTTCCTTATGCTGATGCAAGTGGAGCTGGAAAGGATGTGTATGAATATGAGAAGAGGTTGAGAATGAACATGGGACTTAAAAAATTGCAGGAGAGAGTGAAGAAACAACAAGAGAAAGTTGGAAAAAAGATTCAAACGGTGGGAAAAATTGCTGGAATGCACCCTAATGAATGGGTTGAAAATGCAGATCGATTGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGCTGCCATAAAATGGGAACAGCAATCAGAGACAGAATACAAGAACAATTGAGGGCACAACAGCTGAAATCTCTTCTTTATGATGAGTGGGATGATGATGATTCATTCTATGATGGTGAATACTACTCCGACTAA 693 0.4141 MEEEEQKVMEKGCKEAPVRIYSDGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITHKYKGKTVMTEKERYESLRHCRWVDEVIPDAPWVITKEFLDKHQIDYVAHDSLPYADASGAGKDVYEYEKRLRMNMGLKKLQERVKKQQEKVGKKIQTVGKIAGMHPNEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLRAQQLKSLLYDEWDDDDSFYDGEYYSD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0195 230 Pfam Cytidylyltransferase-like 23 134 IPR004821 GO:0003824|GO:0009058
Vra5g0195 230 Gene3D HUPs 1 186 IPR014729 -
Vra5g0195 230 SUPERFAMILY Nucleotidylyl transferase 19 122 - -
Vra5g0195 230 TIGRFAM cyt_tran_rel: cytidyltransferase-like domain 19 86 IPR004821 GO:0003824|GO:0009058
Vra5g0195 230 PANTHER CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE 2-LIKE ISOFORM X1 3 129 - -
Vra5g0195 230 PANTHER CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE 2-LIKE ISOFORM X1 128 224 - -
Vra5g0195 230 Coils Coil 130 157 - -
Vra5g0195 230 PANTHER CYTIDYLYLTRANSFERASE 3 129 IPR045049 GO:0004105|GO:0006657
Vra5g0195 230 PANTHER CYTIDYLYLTRANSFERASE 128 224 IPR045049 GO:0004105|GO:0006657
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0195 Vra-Chr5 1601442 1606870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0195 44 228 Acyl Lipid Metabolism Gene Families AT2G32260 59.583 2.06e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0195 K00968 - gmx:100791886 381.719