Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0192 ATGGCCTCAAACTCCATGGCTGGCTTCATCACCGGTTCTCATGCTCATTCTTCACGTGATTCCAAGGAGCATCAGGTCCCTACCCGTCAAACTTCATCAAAAACATGTCGTGTCTGTGGTGATGAGATTGGATATAAAGAAAATGGAGAACTGTTTGTGGCTTGTCATGTGTGTGGATTTCCTGTGTGTCGACCATGTTATGAGTATGAGAGGAGTGAAGGAAACCAGAGCTGTCCACAATGCAACACTCGCTATAAGCGCCACAAAGGTTGTCCTAGAGTGGCTGGAGATGAAGAAGATAACTTCGATGCTGATGATTTTGATGATGAGTTTCCAATTAAGAATCACCGAGAAGATCTAGATCGGGAACACGATGTTAACCATGTGGGAAATGGGGACTATAATCAAGAGAAATTGCATCCGAATGGTCAAGCTTTCTCTTCAGCTGGGAGTGTTACTGGCAAGGATTTTGATGGGGACAAAGATTTCTACAGCAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAGAAAAAAGAGGTCTTCTAAACAAAGAAGAGGGAAAAGAAGACCAAGGTGAAGATGATGATTACATTTTGGCTGAAGCTAGACAACCATTGTGGCGCAAGGTTCCAATATCTTCAAGCTTAATCAATCCATACCGCATAGTGATTGTGACTAGGCTGGTCATCCTTGCTTTCTTCTTTAGATTCCGAATCTTAACTCCAGCAAATGATGCATATGCCTTGTGGCTAATCTCTGTTATATGTGAGATATGGTTTGCACTGTCATGGATTCTTGATCAGTTCCCCAAGTGGTTCCCCATCACTCGAGAGACTTACTTGGATCGCTTGGCCTTAAGGTTTGAGCGTGAAGGGGAACCTAACCAACTAGCTCCAGTTGATTTCTTTGTGAGTACTGTGGACCCTCTGAAGGAACCTCCCATTATAACAGCCAACACTGTCCTTTCAATCCTCGCTGTTGACTACCCTGTTGACAAGGTCAGCTGCTATGTCTCAGATGATGGTGCATCCATGCTTCTGTTTGATTCCTTGGCAGAAACTGCTGAGTTTGCAAGAAGATGGGTTCCCTTTTGCAAGAAGTATAACATAGAGCCAAGGGCTCCCGAGTTTTACTTTTCTCAGAAAATTGATTACTTAAAAGATAAGGTGCAACCTACGTTTGTGAAGGAAAGAAGGTCCATGAAGAGGGAATATGAAGAGTTTAAGGTGAAAATTAATTCTTTGGTAGCAAAGGCTCAAAAGAAACCTGAGGAAGGGTGGGTGATGCAGGATGGAACTCCATGGCCAGGGAACAACACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGGTGCACTAGATGTTGAAGGCAAGGAATTGCCACGACTTGTGTATATTTCACGTGAAAAACGACCTGGTTATCCACACCACAAGAAGGCCGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACGAATGCACCATTCATGTTGAATTTGGATTGTGATCACTACGTCAATAATAGCAAGGCAGTAAGAGAGGCTATGTGCTTTTTAATGGACCCCAACCTTGGGAAGAAGTTGTGCTATGTTCAATTTCCACAAAGATTTGATGGTATTGATCGCCATGATAGATATGCTAATCGCAACACTGTGTTCTTTGATATCAACATGAAAGGGCTTGACGGGATTCAAGGTCCAGTATATGTTGGTACTGGAACTGTGTTCAACAGGCAGGCATTGTATGGTTACGATCCACCCGTGTCGGAGAAAAGACCAAAGATGCATTGTGACTGTTGGCCATCATGGTGTTGCTTTTGTTGTGGTGGTTCAAGAAAGTCCAAGTCAAAAAAGAAATCAGGAAAAGGTCTCTTCAGTGTGTTCTCCAAGAACAAAAACAAAAAGAAAATGATGGGGAAAGATTATGTTAGAAAAGGGTCAGGGTCCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGGTATGAGGACTTGGAGAAATCATCCCTCATGTCCCAGAAAAGTTTTGAGAAACGATTCGGGCAATCACCAGTCTTCATTGCTTCCACCTTGATGGAAAATGGAGGACTTCCAGAAGGCACAAATAGCCAATCATTGGTCAAGGAGGCCATTCATGTTATAAGCTGTGGTTATGAAGAGAAGACTGAATGGGGAAAAGAGATTGGTTGGATTTATGGGTCAGTCACAGAAGATATTTTGACTGGATTCAAGATGCATTGTAGAGGATGGAAATCAGTATATTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCCCCAATAAATCTATCAGATAGGTTGCACCAAGTTCTGAGGTGGGCTCTTGGTTCTGTTGAGATTTTCCTTAGTCGCCACTGCCCCTTGTGGTATGGTTATGGAGGAAAACTCAAGTACCTAGAGAGACTAGCTTACACGAATACCATTGTTTATCCATTCACCTCCATTCCTCTTCTTGCCTACTGCACAATTCCTGCTGTGTGTCTCTTGACTGGAAAGTTCATCATTCCCACTCTGACAAACCTTGCTAGCGTTTGGTTTATGGCTCTTTTTATCTCCATCATTTTAACAAGTGTGCTTGAGCTCCGATGGAGTGGCGTTACAATTGAAGCCCTGTGGAGAAATGAGCAATTTTGGGTGATTGGAGGCGTTTCTGCTCACCTTTTTGCTGTGTTTCAAGGTCTGCTCAAAGTTCTTGCTGGAGTAGACACGAATTTCACAGTGACAGCAAAAGCAGCAGAAGACACTGAGTTTGGAGAGCTCTATCTCTTTAAGTGGACCACTCTTCTGATCCCTCCAACCACTCTGATAATCTTGAACATTGTTGGTGTTGTGGCTGGAGTGTCTGATGCAATAAACAATGGGTATGGTTCATGGGGACCTCTGTTTGGGAAGTTGTTCTTTGCCTTTTGGGTCATTGTTCACTTGTACCCTTTCCTCAAAGGTCTAATGGGAAAGCAAAACAGGACTCCTACCATTGTGGTGTTGTGGTCAATCCTTCTAGCATCTATTTTCTCATTGATTTGGGTCAGGATTGATCCCTTCTTGCCCAAGCAAACAGGTCCTGTGCTTAAACAATGTGGGGTGGAATGCTGA 3147 0.4341 MASNSMAGFITGSHAHSSRDSKEHQVPTRQTSSKTCRVCGDEIGYKENGELFVACHVCGFPVCRPCYEYERSEGNQSCPQCNTRYKRHKGCPRVAGDEEDNFDADDFDDEFPIKNHREDLDREHDVNHVGNGDYNQEKLHPNGQAFSSAGSVTGKDFDGDKDFYSNAEWQERVEKWKVRQEKRGLLNKEEGKEDQGEDDDYILAEARQPLWRKVPISSSLINPYRIVIVTRLVILAFFFRFRILTPANDAYALWLISVICEIWFALSWILDQFPKWFPITRETYLDRLALRFEREGEPNQLAPVDFFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDSLAETAEFARRWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRSMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPNLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMHCDCWPSWCCFCCGGSRKSKSKKKSGKGLFSVFSKNKNKKKMMGKDYVRKGSGSMFDLEEIEEGLEGYEDLEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTNSQSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0192 1048 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 417 596 IPR029044 -
Vra5g0192 1048 Pfam Zinc-binding RING-finger 27 101 IPR027934 -
Vra5g0192 1048 Pfam Cellulose synthase 304 1041 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra5g0192 1048 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 22 121 - -
Vra5g0192 1048 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 162 1048 - -
Vra5g0192 1048 MobiDBLite consensus disorder prediction 1 15 - -
Vra5g0192 1048 SUPERFAMILY RING/U-box 21 102 - -
Vra5g0192 1048 SUPERFAMILY Nucleotide-diphospho-sugar transferases 317 852 IPR029044 -
Vra5g0192 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 110 IPR013083 -
Vra5g0192 1048 Coils Coil 402 422 - -
Vra5g0192 1048 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 22 121 - -
Vra5g0192 1048 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 162 1048 - -
Vra5g0192 1048 CDD mRING-HC-C4C4_CesA_plant 34 84 - -
Vra5g0192 1048 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0192 Vra-Chr5 1572845 1578575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0192 27 1048 Glycosyltransferase AT5G05170 66.295 0.0 1441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0192 K10999 - gmx:100781996 2039.62