Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0191 ATGGCAAGAAAATCCTTAGCCTGCTCCTTGCTTTTGGGGATGGCTTGTTCCATAGTAATTGGTGCATATGAAGACAGCTTGTATCCCAGAACAATTTCCAGTGACAATTATCATGAAGCAATACAACGTTTGCAGTCATTTAAGTCCTCTTTAACTACACCTGATTCCATTGCTTCTGCACCATCTTTATCACCCTTCTCATCTCTTTCTGCTCCTGTTCCTGTTCCTGCTCCTTCTCCTCTCTCACTTCAGGGAGTGAACTATCCACGTGTGTACCATGTAACATCTTATGGTGCGGATCCAACTGGTAGTTCAGATAGCACTGAAGCACTCCTTGCAGCCATAGAAGATGCAGCCAAGGGTCCCAGTGAAGGATATTTGATGCAAGGCATCAAAAATCTTGGAGGCTCCCAGATTAATCTTGAGGGTGGAAATTACTTGATCAGCCAGCCACTGCGGTTGCCGGTGGCCGGAGTGGGGAACCTTATGATACATGGGGGGACGATAAGAGCCTCAGATGGTTTTCCAGCAGATAGCTATATCATTGATTTGTCACCCTCTTCCAACGAAGGAAACATAAATAGTTCTTCAGATTCCTACAATTTTGAGTACATAACTCTCAAAGATCTCTTGTTGGACTCAAACTTTAGGGGAGGAGGCATTTCAGTGATAAACTCACTTCGGATTAGCATAGACAATTGTTACATCACACATTTCACCACTAATGGAATTTTAGTGGAAAAAGGCCATGAAACCTACATCAGAAACACTTTCCTTGGTCAGCATATAACTGCTGGTGGGGACAAAAATGAAAGAAACTTCTCAGGCACAGGAATAAACCTCCAGGGTAATGACAATGCCGTCACAGATGTTGTAATTTTCTCTGCTGCTATAGGAATAATTGTTACTGGTCAAGCCAACGCATTTTCTGGTGTACATTGTTACAACAAGGCCACTGGCTTTGGAGGTACAGGGATTTATTTGAAACTACCTGGATTAACACAAACTAGAATTGTGAATTCTTACATGGATTACACGAATATCGTGGTTGAAGACCCTGTTCAGTTCCATGTTTCTAGTTGTTTCTTCCTTGGTGATGCCAACATTGTCCTAAAGTCTAAGAATGGGGTTATAAATGGTGTTGATATTGTTGATAACTTGTTCTCGGGTTCCGATCATGGGGTTGAAATTGTTCAGCTGGACCAATCCAATAATCCTTTCCATCAAATTGAACGAGTTACTGTTGACAGAAACAATGCAAGAGGGATGAAGTTAAAGGCCACAGTTGCAAAAGGGTCCATGCAAGGGAATGGAACCTCATGGACCGTTGATTTTAACAATGTTTTACTTTTTCCCAACCTTATAAAACATGTTCAGTACTCTCTAAGCACCCCTGGCAGTACCTTCCCGAATCATATTCTACGGAATGTGTCTGAGAATCGTGTTGTGATTGAAACAAACGAAGCAGTGCCTGCCAGTGTTTTTGTAACGGTGGATCAAAGTGAGACAAGTTGA 1515 0.4218 MARKSLACSLLLGMACSIVIGAYEDSLYPRTISSDNYHEAIQRLQSFKSSLTTPDSIASAPSLSPFSSLSAPVPVPAPSPLSLQGVNYPRVYHVTSYGADPTGSSDSTEALLAAIEDAAKGPSEGYLMQGIKNLGGSQINLEGGNYLISQPLRLPVAGVGNLMIHGGTIRASDGFPADSYIIDLSPSSNEGNINSSSDSYNFEYITLKDLLLDSNFRGGGISVINSLRISIDNCYITHFTTNGILVEKGHETYIRNTFLGQHITAGGDKNERNFSGTGINLQGNDNAVTDVVIFSAAIGIIVTGQANAFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTNIVVEDPVQFHVSSCFFLGDANIVLKSKNGVINGVDIVDNLFSGSDHGVEIVQLDQSNNPFHQIERVTVDRNNARGMKLKATVAKGSMQGNGTSWTVDFNNVLLFPNLIKHVQYSLSTPGSTFPNHILRNVSENRVVIETNEAVPASVFVTVDQSETS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0191 504 PANTHER POLYGALACTURONASE QRT3 1 504 IPR039279 GO:0004650
Vra5g0191 504 Gene3D - 91 501 IPR012334 -
Vra5g0191 504 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 1 504 - -
Vra5g0191 504 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vra5g0191 504 Pfam Pectate lyase superfamily protein 94 320 IPR024535 -
Vra5g0191 504 SUPERFAMILY Pectin lyase-like 90 476 IPR011050 -
Vra5g0191 504 SMART pbh1 283 304 IPR006626 -
Vra5g0191 504 SMART pbh1 226 248 IPR006626 -
Vra5g0191 504 SMART pbh1 159 225 IPR006626 -
Vra5g0191 504 SMART pbh1 405 427 IPR006626 -
Vra5g0191 504 SMART pbh1 373 399 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0191 Vra-Chr5 1568720 1572759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0191 - - gmx:100804107 812.372