Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0190 ATGTTTTCCACCACCACCACTTTTCTTCACTCTTGCTTCCTTCTCTCCTGCCTCCTCTCAGCTCTTTCCTGTGTTTCCATGTTCTCTGGTATTGAGACAGGAGATTTAGAAAAAAGAGATGATTTGTTTCCACAGATTCTAAGAGACGAGGCAGTGGCGAGGCTTTATGAGCTTGGGAAGGTGAGCGATGGTAAAAATTATTTGGAGAGGACATTCTTGAGTCCTGCATCCATGAGGGCAATTAGTCTTATTCGTAGATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACACGGTCGAGTCGATGGTGCAAATGCAAATGCTGAAGCTTTATTGATTGGTTCTCACATGGACACTGTTGTTGATGCTGGGATGTTTGATGGATCCCTAGGAATAGTCTCTGCAATATCTGCCTTGAAGGCCATGCATGTCAATGGAAAGCTGGAAAAGCTAAAGCGCCCCGTTGAGGTGATTGCATTTAGCGATGAAGAGGGTGTGAGATTTCAAACTACTTTCTTGGGCAGTGGTGCTATAGCTGGTATTTTGCCTGCTACAACATTGGAGATATCTGATAAGAGGGATGTAATGATAAAAGATTTTCTTAAGGAGAACTCAATAGACATTACAGAGGAAAGTCTTTTGAAGCTCAAGTATGACCCAAAATCTGTTTGGGGTTATGTTGAGGTTCACATTGAGCAGGGTCCTGTGCTAGAACAAGTTGGTTTCCCACTTGGTGTGGTTAAAGGCATAGCTGGGCAGACACGATTGAAGGTTACAGTTAGAGGATCACAAGGTCATGCTGGAACAGTCCCTATGTCCATGCGCCAGGATCCTATGGCAGCTGCTGCGGAACAAATTGTGGTCTTGGAAAGCCTCTGTAAACATCCTGAAGAATACCTTTCTTATGATGCTCATTGCAGTGATTCAACAGTGAAATCACTGTCAAGCTCACTTGTCTGTACTGTTGGAGAGATATCAACATGGCCAAGTGCCAGTAATGTCATTCCAGGCCAGGTTACGTATACAGTGGACATACGAGCAATTGATGACCTCGGACGTGAGGCTGTTATCTATGATTTGTCAAAACAAATTTACCAAATATGTGACAAGCGTTCAGTTTCCTGCATTATTGAACACAAGCATGATGCAGGTGCTGTGATTTGTGATTCTGATCTGAGTTCTCAGCTCAAGTCTGCAACTTATTCTGCACTAAAGAAGATGGAGGGTGACATCCAGGATGAAGTGCCAACATTAATGAGTGGAGCAGGCCATGATGCAATGGCAATATCTCACTTAACAAAGGTGGGAATGCTGTTTGTGCGATGTCGTGGAGGCATCAGTCACTCTCCACAAGAACATGTGCTAGATAACGATGTCTGGGCAGCTGGTTTAGCAACCTTGTCATTTCTGGAAAATCTATCATAA 1443 0.4394 MFSTTTTFLHSCFLLSCLLSALSCVSMFSGIETGDLEKRDDLFPQILRDEAVARLYELGKVSDGKNYLERTFLSPASMRAISLIRRWMEDAGLRTWVDQMGNVHGRVDGANANAEALLIGSHMDTVVDAGMFDGSLGIVSAISALKAMHVNGKLEKLKRPVEVIAFSDEEGVRFQTTFLGSGAIAGILPATTLEISDKRDVMIKDFLKENSIDITEESLLKLKYDPKSVWGYVEVHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAEQIVVLESLCKHPEEYLSYDAHCSDSTVKSLSSSLVCTVGEISTWPSASNVIPGQVTYTVDIRAIDDLGREAVIYDLSKQIYQICDKRSVSCIIEHKHDAGAVICDSDLSSQLKSATYSALKKMEGDIQDEVPTLMSGAGHDAMAISHLTKVGMLFVRCRGGISHSPQEHVLDNDVWAAGLATLSFLENLS* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0190 480 SUPERFAMILY Zn-dependent exopeptidases 43 479 - -
Vra5g0190 480 PANTHER ALLANTOATE DEIMINASE-RELATED 38 473 IPR010158 GO:0016813
Vra5g0190 480 SUPERFAMILY Bacterial exopeptidase dimerisation domain 258 390 IPR036264 -
Vra5g0190 480 Gene3D Zn peptidases 64 469 - -
Vra5g0190 480 Pfam Peptidase family M20/M25/M40 118 468 IPR002933 GO:0016787
Vra5g0190 480 Gene3D - 258 390 - -
Vra5g0190 480 PANTHER ALLANTOATE DEIMINASE-RELATED 38 473 - -
Vra5g0190 480 CDD M20_bAS 52 477 - -
Vra5g0190 480 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 52 472 IPR010158 GO:0016813
Vra5g0190 480 Pfam Peptidase dimerisation domain 258 369 IPR011650 -
Vra5g0190 480 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 117 126 IPR001261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0190 Vra-Chr5 1541424 1545803 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0190 K02083 - gmx:100819399 886.715