Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0180 ATGAAACTGTGCGTTGCTGCGGCTGCAGCCGTCACTCTGTTTGCGGCGTGGCTGATTCTTGTCGACGCGCGGTTTGTGGTGGAGAAGAGCAGCATAACTGTTCTTTCGCCGCACAAGATGCGGACGAAACGTGACGGCGCCATCGGTAACTTTGGCCTTCCCGACTACGGAGGATTCATCGTTGGCTCTGTCGTGTATCCAGCCAAAGGCTCGCACGGTTGTCAGGTCTTCGACGGAGATAAGCCTTTCAAACTTCAGTCCTATCGTCCTACTATTGTTCTTCTTGATCGTGGAGAGTGTTATTTTGCCTTGAAGGTTTGGCATGCACAACTAGCTGGTGCTGCAGCAGTTTTGGTGACTGACAGCATTGATGAGTCTCTTATTACCATGGATTCTCCTGAGGAGAGCTCTGATGCTGATGGATACATCGAGAAGATCGTGATTCCATCAGCTCTGATAGAAAAATCCTTTGGTGATTCGTTGAAGGACGCTTTGAAGAACAAAGATGAAGTTTTGCTCAGAATTGACTGGAGAGAGTCAGTACCTCACCCTGATAACAGAGTTGAGTATGAGTTTTGGACCAACAGCAATGATGAATGTGGAGCTCGTTGTGATGAACAGATGAATTTCGTGAAGAATTTTAAGGGTCATGCTCAGATTCTTGAGAGGGGTGGCTACACCTTGTTCACACCTCACTATATAACGTGGTTTTGTCCACCGCCCTTCATTCTTAGCAGTCAGTGTAAATCGCAGTGTATAAACCATGGGAGATATTGTGCCCCGGATCCAGAGAAGGATTTTGGTGAGGGATATGAAGGAAAGGATGTGGTGTACGAAAATTTGAGGCAGCTGTGTGTCCATAGGGTTGCCAATGAGAGCAATCGTTCATGGGTCTGGTGGGATTATGTGACAGATTTCCATATCAGATGTTCTATGAAGGAGAAAAGATACAGCAAAGATTGTGCTGAGGAAGTGATGAAATCATTGGATCTGCCTATGGAGAAAATTAAAAAATGCATGGGTGATCCTGAAGCGGATGTGGAGAATGAAGTGCTAAAGAATGAGCAACAAGTCCAGATCGGTAGAGGATCTCGTGGTGATATCACCATTTTGCCAACATTGGTTTTAAACAATGTCCAGTATAGAGGAAAATTGGAGAGAACTGCTGTACTGAAGGCTATATGTTCTGGGTTTAAGGAGACTACTGAACCTTCAGTTTGTTTAAGTGGAGATGTTGAGACTAATGAGTGTCTTGAAAGAAATGGAGGATGCTGGGAAGACAAAAAGGCTAACATAACTGCTTGCAAGGACACATTCAGGGGAAGAGTTTGCGAGTGCCCTGTTGTGAACGGTGTTCAGTATAAGGGTGATGGCTATACTACATGTGAAGCTTTTGGACCTGCAAGGTGTTCTATAAACAATGGTGGTTGTTGGTCAGAAACTAAAAACGGAGTTACTTTCTCAGCTTGCTCAGACTCCAAGGCGAATGGTTGTCAATGCCCGGTTGGGTTTGTTGGGGATGGTTATAAATGCGAAGATGTTGACGAATGTAAGGAAAGAAGTGTTTGTCAGTGTGATGGCTGTAGCTGCAAGGACACTTGGGGTGGTTACGATTGTAAATGCAAAGGAAATCTTCTATATATAAAGGAACAAGATGTCTGTATTGAAAGAAGTGGATCACGATTTGGACGGTTCCTTGCCTTTGTGGTCATAGCAGTTGTTCTGGGCGCTGGTCTAGCTGGTTACGTGTTCTACAAATATAGGCTCCGGTCTTACATGGACTCCGAGATCATGGCTATCATGTCACAATACATGCCACTGGACCAGCAAAATAATGTAGTTCATGCTGAAGCTCAGCCTTTACGACAAGAAGGCACCGCGTAA 1884 0.4506 MKLCVAAAAAVTLFAAWLILVDARFVVEKSSITVLSPHKMRTKRDGAIGNFGLPDYGGFIVGSVVYPAKGSHGCQVFDGDKPFKLQSYRPTIVLLDRGECYFALKVWHAQLAGAAAVLVTDSIDESLITMDSPEESSDADGYIEKIVIPSALIEKSFGDSLKDALKNKDEVLLRIDWRESVPHPDNRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPPPFILSSQCKSQCINHGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKDCAEEVMKSLDLPMEKIKKCMGDPEADVENEVLKNEQQVQIGRGSRGDITILPTLVLNNVQYRGKLERTAVLKAICSGFKETTEPSVCLSGDVETNECLERNGGCWEDKKANITACKDTFRGRVCECPVVNGVQYKGDGYTTCEAFGPARCSINNGGCWSETKNGVTFSACSDSKANGCQCPVGFVGDGYKCEDVDECKERSVCQCDGCSCKDTWGGYDCKCKGNLLYIKEQDVCIERSGSRFGRFLAFVVIAVVLGAGLAGYVFYKYRLRSYMDSEIMAIMSQYMPLDQQNNVVHAEAQPLRQEGTA* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0180 627 SUPERFAMILY PA domain 90 168 IPR046450 -
Vra5g0180 627 Gene3D Laminin 407 463 - -
Vra5g0180 627 Pfam PA domain 62 161 IPR003137 -
Vra5g0180 627 CDD EGF_CA 513 542 - -
Vra5g0180 627 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 16 603 - -
Vra5g0180 627 SMART egfca_6 513 555 IPR001881 GO:0005509
Vra5g0180 627 ProSitePatterns Calcium-binding EGF-like domain signature. 513 539 IPR018097 GO:0005509
Vra5g0180 627 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 16 603 - -
Vra5g0180 627 Gene3D - 22 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0180 Vra-Chr5 1490051 1495941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0180 5 624 Miscellaneous Gene Families AT1G30900 71.108 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0180 - - pvu:PHAVU_009G243800g 1261.13