Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0179 ATGGCTCCATCAACAACGTTAACCCTCTCACAACTGTCTGTGTCTCTTGTTCTGCTTTTCTTCATGTCACTTTCTTCTTCCTATGCTACTTCTCGTCTCACCCATCACCCTGCAAACTCACATCAATCACCAGCACAAACGCTCATAAGAAGCTTCAACCTGTTCCCAAAGGACCCAGTAAACATTCTCCAAGGTGACAGTCAAGCTTTTGTTTCAGGGAAGATCGTGGAGAAAAAGTTCTCTTTTTTCGGTGATTCTGGACCTTCTATTCAAGACCTTGGTCACCATGCAGGTTACTATTCACTTCCCAGTTCCAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAGTCAAGGAACAGCAAGGATGACCCAGTTGTGATATGGTTAACTGGAGGACCAGGGTGTGGCAGTGAATTGGCTTTGTTTTATGAGAATGGCCCTTTTCATATTGCCAATAATTTGTCTCTTTTATGGAATGATTATGGTTGGGATCAGGCATCAAATATTTTATTTGTTGACCAACCTACTGGTACAGGGTTTAGTTACACTTCTGATGACAGTGACATTCGTCATGATGAAACTGGCGTTAGCAATGATTTATATAACTTCTTGCAGGAGTTTTTCAAGGCACACCCTGAGTTCGTTAAGAATGACTTCTATATCACTGGTGAATCATATGCTGGACACTATATTCCTGCTCTTGCATCCCGGGTTAACCAAGGAAACAAAGGAAATCAAGGAATTCATATAAACCTCAAGGGTTTTGCAATTGGTAATGGGTTAACAAATCCTGCAATTCAGTTCCCAGCATACCCAGACTTTGCATTAGATAATGGAATTATCACAAAGGCTGAACATGATGATATAAGCAAGTCAATTCCTGTTTGTGAACAAGCTGCTAAAACTTGCCAAACTCAAGGTGGAACAAGTTGTGATAATGCATTGAATATATGTTATAAAATTTTCTCAAATATATTGTCCATTGCCGGGGACATTAATTACTATGACATCAGAAAGAAGTGTGTTGGGGCACTGTGCTATGATTTCAGCAACTTGGAGACGCTGCTAAACCTGCAGAAAGTTAAGAGTGCTTTAAGTGTGCCGGGTAACTTGAAGTTTGTTTCATGCAGTTCAACAGTGTACGATGCTATGATTCAAGATTGGATGAAAAATCTGGAAGTGGGGATTCCTGCTCTTCTTGAGGATGGAATCAAGGTGCTTGTGTATGCAGGGGAAAAAGATCTCATATGCAACTGGTTAGGAAACTCAAGGTGGGTTCATGCAATGCAGTGGTCAGGCCAAAAGGCGTTTGGAACATCTCCTACAGTGAAATTTGTTGTTGATGGTGTAGATGCAGGGTCTTTGAACAGCTATGGACCTCTATCTTTTCTCAAGGTATATGAGGCTGGGCATATGGTTCCTATGGATCAACCAAAAGCTGCACTTGAGATGCTAAAAAGATGGATGGGAGGGAAACTGGCCACACACAGATAA 1494 0.413 MAPSTTLTLSQLSVSLVLLFFMSLSSSYATSRLTHHPANSHQSPAQTLIRSFNLFPKDPVNILQGDSQAFVSGKIVEKKFSFFGDSGPSIQDLGHHAGYYSLPSSKAARMFYFFFESRNSKDDPVVIWLTGGPGCGSELALFYENGPFHIANNLSLLWNDYGWDQASNILFVDQPTGTGFSYTSDDSDIRHDETGVSNDLYNFLQEFFKAHPEFVKNDFYITGESYAGHYIPALASRVNQGNKGNQGIHINLKGFAIGNGLTNPAIQFPAYPDFALDNGIITKAEHDDISKSIPVCEQAAKTCQTQGGTSCDNALNICYKIFSNILSIAGDINYYDIRKKCVGALCYDFSNLETLLNLQKVKSALSVPGNLKFVSCSSTVYDAMIQDWMKNLEVGIPALLEDGIKVLVYAGEKDLICNWLGNSRWVHAMQWSGQKAFGTSPTVKFVVDGVDAGSLNSYGPLSFLKVYEAGHMVPMDQPKAALEMLKRWMGGKLATHR* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0179 497 SUPERFAMILY alpha/beta-Hydrolases 94 492 IPR029058 -
Vra5g0179 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 171 IPR001563 GO:0004185|GO:0006508
Vra5g0179 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 182 IPR001563 GO:0004185|GO:0006508
Vra5g0179 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 207 232 IPR001563 GO:0004185|GO:0006508
Vra5g0179 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 461 474 IPR001563 GO:0004185|GO:0006508
Vra5g0179 497 Pfam Serine carboxypeptidase 92 490 IPR001563 GO:0004185|GO:0006508
Vra5g0179 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 492 IPR001563 GO:0004185|GO:0006508
Vra5g0179 497 Gene3D alpha/beta hydrolase 77 496 IPR029058 -
Vra5g0179 497 ProSitePatterns Serine carboxypeptidases, serine active site. 221 228 IPR018202 GO:0004185
Vra5g0179 497 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 48-RELATED 37 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0179 Vra-Chr5 1476949 1480271 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0179 K16298 - gmx:100789937 833.558