Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0174 ATGGCACCGCCCCGAGAGCTTCAGGGCTTTTACTATGATCCTGAGAAGAACAGGTATTTCCCCATCAAAGGCCCCATTCCGGGCTCTTCTTCTAAACCCAAGAACCCTACTCCCAAAGCTCCTCAAACCCCTTCCAATCAGACTGGTAGGAGTTCTTGCAGGAAGCTCAGAAACAGAACCTTGCCGAAGCTGCTTCAGGCTAGAGAGTTGGAGGGTCGCCATGTCATTTATCCTCATTATTGCAGATGTAACTTTGCCGAGGAATATGACAAAATTCAAGCATCTAAACCTGTGGTCTGGAGATACCGGGGAACAGATAAGATGGGTGTTTGTGCTTTGAAACACTTGCGCGTTGATCTGCAGACTTTGCAGGGGCAAACTGAAACTGATGTTTTGTTGACGGGCAGCATAAATGGCTCCTTGAGTTTTTCTGAAGTTGGAGGGGTTGGGCAATATTTTGATGATGGGACAAAATGGAGAGCAGATTGTGTGAAGAATTTTGTTAAAGGGAAAACATTTGAGCATGATGAAATGCGTAAGCCAGTTTTCAGACCTAATCGAGCTGCATTGCTTATGCCCTCCAGAATATCTTGTATAAGGTTGGGTCCAAAGTGCTCTCCTCAGGCAGAGAATGATGGTTCTGTTGCAGGACGTGTTTTATTTACTACATTGGGATCAGAAACGTCAGGTGGATCGGTTTATACTCTTGGTCTTGTTGAACCGTTAAATCTTGGTCCAGGTATACTGAACACGTGGAGTGGACTTGAGGAAATTGCTTCTTTTAGATGTACCCTTTGGACAGCAGAATATGATTATAATAGACACCGGGCTGTAATTGGTACAAGTTTAGGAGGTGCTTCAGTGGATCTGGAAACCAGGATGGAAACATGGTTTTTACGTTGCAAAAGTGATGTTTTTGCACAACAAATTATTAATTCTGGAAATGTGATTTTATGTGGGCTTAGAAATGGGGCCATTGTCACTGCAGATTTTCGTGAGAAAAGAGAAAGTCTTTCTGATAGACTTATTAGCCATCGGATACCATATAGTTCAAGCATTGGAGGTTGTAAAAAGGAATGGTTCAAGCTCAAAGGGGACATATTTCCTTCCCACACAATTAGGATGCCTTCATCTATATCTTCTTTGGTGTCACTTCAGTTTGATGAGCAGTACTTTCTAGCTAGCGCAATGGATGGATCGATTAGGCTATATGATCATCGTCTACTTCAGAGGGGTGCTGTTCAAAGTTATGAAGGGCATGTAAATTCTCATACTCGTATACAACTTGGTGTCGACCCAACTGAGAGATTTGTTACGTCAGGTGGAGAGGATTGCAAACTACGGTCATGGAGTCTCAAGTCTGGTGAATTGCTTTTTGAGGAGAAGTTCTCTGATTCAATTGTCTCCACTATGTGCTATAAAACATACAGTAGTTGTAAAGCAGAAGAGGAAAACCAATACAAGCGTGACTCCTCTCATGGTGCATGGCTTGGATCACATGAAGGACTGTTTTATATGCGCTGGTTATGA 1530 0.4294 MAPPRELQGFYYDPEKNRYFPIKGPIPGSSSKPKNPTPKAPQTPSNQTGRSSCRKLRNRTLPKLLQARELEGRHVIYPHYCRCNFAEEYDKIQASKPVVWRYRGTDKMGVCALKHLRVDLQTLQGQTETDVLLTGSINGSLSFSEVGGVGQYFDDGTKWRADCVKNFVKGKTFEHDEMRKPVFRPNRAALLMPSRISCIRLGPKCSPQAENDGSVAGRVLFTTLGSETSGGSVYTLGLVEPLNLGPGILNTWSGLEEIASFRCTLWTAEYDYNRHRAVIGTSLGGASVDLETRMETWFLRCKSDVFAQQIINSGNVILCGLRNGAIVTADFREKRESLSDRLISHRIPYSSSIGGCKKEWFKLKGDIFPSHTIRMPSSISSLVSLQFDEQYFLASAMDGSIRLYDHRLLQRGAVQSYEGHVNSHTRIQLGVDPTERFVTSGGEDCKLRSWSLKSGELLFEEKFSDSIVSTMCYKTYSSCKAEEENQYKRDSSHGAWLGSHEGLFYMRWL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0174 509 Pfam WD domain, G-beta repeat 414 451 IPR001680 GO:0005515
Vra5g0174 509 MobiDBLite consensus disorder prediction 1 54 - -
Vra5g0174 509 PANTHER KATANIN P80 SUBUNIT 12 507 - -
Vra5g0174 509 SUPERFAMILY WD40 repeat-like 289 472 IPR036322 GO:0005515
Vra5g0174 509 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 507 - -
Vra5g0174 509 Gene3D - 261 504 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0174 380 476 Miscellaneous Gene Families AT5G08390 26.263 8.32e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0174 K11799 - gmx:100798753 833.558