Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0170 ATGGCATCTTCCGAGGTTGAGATTGCTTCTTCCTCGCCCTTCGGTTCCGTTCTGAGGGACCGCAACCACCGCGAAGAATGCAGGGAAAGCAACGCCAAGGGCACGCATAATCATCATGCTAAGTTACAAAGAAACAACAAGAACTTTGTCACGGACATTAACACGTGCCGGGGGGTGTCTTCTGATTCCGCAACAAACGAAAACAACAGCGACGCCAGCAAGAACAAAGGCGTTAACCAGCGTAAGGCTCCCAAAAACAATCGCTTGGAGAAACTTCGTTTCACACGAGCCAACTCCTTCAACGACAACGGCAGCGGCGGCAACAACAACAACAAAAAGGAGACCTCTTTGTCCTTGTTGATCAGCCCAAGACACTCACAGCTTCTCGATCGATGGGCAGCGAGACAGGCTCGGGAGATGGTGTCGAATTTGGAGAATGGGGCCGAACTGTTGTCAATGGATGATATTGACATTTTCCCAAGGACACCCAGTTCGACATCTGAGGAAGAATCATGCTCTTTGGAGATCCCTAACATGGCTGCCTCTTCTCTTGTTCAGATATGGGAGAAGAGACTGAAACAATCAGGTGTCTCCAAAACGAACACATTGTCTGAGAAGATTGGTTCGTCCTCTTCTCCCACGAATGAGAATGGTAATGCTTCATTCCCCGAGGAAGAATGCTTTGATGGACCCTCAGGGAATGAAGAAAGTTCCTTTCAGTCCTCATTTCATGAGTGGGAATCGAGTGATCATTCCGTTTCGCCACAAGCAAGGTCAGAGAGTGGTGTCAGTGTTGCTAGCATCATAAAGAAACTCACTTCTACCAGCCAGAATCAGAGTCCAACAGCTTCCTTTCTTGATGAGAATGAACAAGAAGGGTATTTTAGTAGTAGTGTGACAGGTTCTCCTTGTAGAGAGCGTGAATGCGGTCAACAACAACCTCCTTCAGAGCATAAACCGGTGTGTCCCCTGCGAATTAGAGGGCGTCAGGCATTCAATGATTTGCTTATGCAGATGGAGAATGACAGGCACAGGGAGCTCAACAACCTGTCAGAGCGTGGAACCGTGTCTAAGTTTGCACAAAGAGGTCGCATTCAGGCATTGCTTCGGATTAAATTATTGCAACGTGATCTGTTGGCTAATGATCGCTCCCGGCAGAATTCAACATCATGTGAAGTAAACAACAGACAATCACAAGGGTCTGCAATTATGCAATTAAGGGAAAGATTTAGCAGTGGGGTTGAACCTAGAACTTCGGTCCATGCAGAAGTAGCTAACCCAAGAAGTCCTCAAAGAGAGGCAGTTAACAAAACCACTCAATTGGGTAACTCTGCCACCACTGATCAAGTCAGAAAAGACACAAGAAACCAGACAGCTCATGAAAGTGCAAATCATGCCACAAAATCCCCACAAAAGTCTGTTTCACATACTAGAATAGATCATAATACAGAAGAAGCTCCTCCAAGTTCAGGTGTCGTGATCCAAGAAACAAATCCACGTTCAGATGCCAAGGCTGAACACAATAACTCAAAAGAAACTAGTGAGGCAACGACGTCCATGACTGATTCAGGTCTAAAAGAGATGACAGACAGGGCAGAAGCGAGTAGCGAACAGAATGGTGATACTAAAAGTAGTAATGATGAGACAGTAAATGAAGAAGATAATAGTAACGAGCAGTATGCTGAATCCAGTTGCCAGGAGACAGTAGAAGAGGCAAGTAATCAGAATTATGCTGAAAGCAGTTATGGTGATGAGATGGAGGGAGAGGAAACTGACCAGAATTGTGACTATGAAACTAATTATAACTGGATCAGTGAAATTTCTAGGCCTAAGAGCTATTGGGAAGAGCGCAGGCAAGCCTGGTATAGAGAGATGCTTGAAACTGGTTCTCAGAATGAGGATATAAGGAGGCTTCTTGAAAGAAGAACAGTGTCAAGTTTCCTTTCTAGTGACTTTCGGGATAGAATGGATAGATTGATGGAATCTCATAGGGGAACTCAAGCACATTTAGTCAATAGCCAGGACTATGAGGAAAACAGCCAAGAATTGATGGCATTTTTACAAGAACGCTTGCATTCTGCAAGAGCTTCTCAAGATGGAAGAGATGCAATTGAGGAAGAAGAAGAGGAGGATAATGCAGATGAGCATGAAGAGGAGCATGAGAGCTTGATAAGCGATCCATATCATGAACCTGGTGATTATTCTAATCGTTCATCACCATGCAGTTACAGGGACAATGAAGCCGGTGATTATTCTCCATCCCGACAACCTTATCAATCTCAATCTTTCTATCAGGACAGTCGGCAATCTGCATCTCCATCCACCAATCATCATTCAATGGAAATGGAACTCATATATGATTTGAGAGGGCACATGGAGCAACTCTATCACGAGATGTCTGAGCTGAAGAAAATAATAAAGGGCTGCATGAATATGCAGATGGAATTACAACAAACCATGAAAGTAGAGATTAACTCAGTTGAAAAAGAAGAAAAGAAGTCCCGTAACAGGACTCCAAAAAAGAAAGGCAACTGCTGCATTTGCTATGAGGTGAAAGTTGACTCTGTTTTGTACAGGTGTGGACACATGTGTGCGTGTCTCAAGTGTGCCATCGAGCTGCAATGTAACAGTGGAAAATGTCCCATATGTCGGGCTAAAATAGTGGATGTTGTTCGAGTGTATATTGACGGTTAG 2694 0.4439 MASSEVEIASSSPFGSVLRDRNHREECRESNAKGTHNHHAKLQRNNKNFVTDINTCRGVSSDSATNENNSDASKNKGVNQRKAPKNNRLEKLRFTRANSFNDNGSGGNNNNKKETSLSLLISPRHSQLLDRWAARQAREMVSNLENGAELLSMDDIDIFPRTPSSTSEEESCSLEIPNMAASSLVQIWEKRLKQSGVSKTNTLSEKIGSSSSPTNENGNASFPEEECFDGPSGNEESSFQSSFHEWESSDHSVSPQARSESGVSVASIIKKLTSTSQNQSPTASFLDENEQEGYFSSSVTGSPCRERECGQQQPPSEHKPVCPLRIRGRQAFNDLLMQMENDRHRELNNLSERGTVSKFAQRGRIQALLRIKLLQRDLLANDRSRQNSTSCEVNNRQSQGSAIMQLRERFSSGVEPRTSVHAEVANPRSPQREAVNKTTQLGNSATTDQVRKDTRNQTAHESANHATKSPQKSVSHTRIDHNTEEAPPSSGVVIQETNPRSDAKAEHNNSKETSEATTSMTDSGLKEMTDRAEASSEQNGDTKSSNDETVNEEDNSNEQYAESSCQETVEEASNQNYAESSYGDEMEGEETDQNCDYETNYNWISEISRPKSYWEERRQAWYREMLETGSQNEDIRRLLERRTVSSFLSSDFRDRMDRLMESHRGTQAHLVNSQDYEENSQELMAFLQERLHSARASQDGRDAIEEEEEEDNADEHEEEHESLISDPYHEPGDYSNRSSPCSYRDNEAGDYSPSRQPYQSQSFYQDSRQSASPSTNHHSMEMELIYDLRGHMEQLYHEMSELKKIIKGCMNMQMELQQTMKVEINSVEKEEKKSRNRTPKKKGNCCICYEVKVDSVLYRCGHMCACLKCAIELQCNSGKCPICRAKIVDVVRVYIDG* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0170 897 MobiDBLite consensus disorder prediction 752 778 - -
Vra5g0170 897 CDD mRING-HC-C3HC5_NEU1 844 884 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 383 402 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 274 309 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 198 221 - -
Vra5g0170 897 PANTHER BNAC05G24000D PROTEIN 1 896 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 1 46 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 693 778 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 411 591 - -
Vra5g0170 897 SUPERFAMILY RING/U-box 844 889 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 431 452 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 58 82 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 1 17 - -
Vra5g0170 897 Coils Coil 706 726 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 233 261 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 198 261 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 18 36 - -
Vra5g0170 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 820 896 IPR013083 -
Vra5g0170 897 Pfam Zinc finger, C3HC4 type (RING finger) 842 889 - -
Vra5g0170 897 PANTHER BNAC05G24000D PROTEIN 1 896 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 556 581 - -
Vra5g0170 897 ProSiteProfiles Zinc finger RING-type profile. 845 884 IPR001841 -
Vra5g0170 897 MobiDBLite consensus disorder prediction 58 114 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 703 717 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 274 321 - -
Vra5g0170 897 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0170 Vra-Chr5 1385195 1389776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0170 816 894 Miscellaneous Gene Families AT4G39050 30.380 3.04e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0170 - - vun:114162588 1462.59