Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0169 ATGCGTTCTCGATCTCATTATGGATTTTCGATTACCCAAAATGCCCTCGCGCTGCTTTATTTATTCTGCATCTTCACCAACCCACCTGCGTCCACGGCTCTCAACTTCACCGCGCTGCTCTCCACCGTCCCTGACCTCTCCCAATTCACCGCGCTCCTTGCCTCCGCAACGCCTATAACGGCGGATCTCTCCGACCGCTCCTCCCTCTCCATCCTCGCCGTCCCCAACGCCTATCTCGCCGCCGATGACCACCTCGCCCGCCACCACCTCTCCCCCGCTGCCCTCGCCGATGTCCTCCGCTACCACGTCCTCCTCCAGTTCCTCTCCTGGTCCGACCTCCGCGCCCTCCCCCCCGCCGGGAAACTCGTCACCACTCTCCTCCAGACAACCGGACGCGCCACCGACAACTTCGGTTCCGTGAACCTCACGCGCGACCCCCAATCCGGCCTCGTCTCGATCCGCTCCCCCGCCCCGTACTCCCCCTCAAACGTCACCGTTTTGTCCCTCGTCAAAACCCTACCCTACAATGTCACCATCTTCGCCGTCAATTCCCTCCTCATCCCCTACGGCCTTGACCTCATGGCGTCCGAAACCCGCCCCAACATCGTCCTCAACATCACCAAAGCCCTAATCGACGGCCACAACTTCAACGTCGCCGCCTCAATGCTCGCGGCCTCCGGCGTAGTTCAGGAATTTGAGGCTGATGAGGGTGGTGCTGGAATCACTCTTTTCGTACCGGTGGATGATGCCTTTGCTGATCTTCCACCCTCTGTGGCCCTTCAGTCTCTACCTGCAGATAAAAAAGGGGTGGTTCTTAAATTCCATGTCCTCCATTCCTATTACCCTCTTGGCTCGCTTGAATCGGTTGTTAACCCCTTCCAACCCACCCTCGCCACTGAGGCCATGGGTGCTGGTAGTTTCACACTCAACATTTCGCGTGTGAATGGCTCTGTTGCCATCAACACCGGCATTGTACAGGCCTCAGTTACGCAGACCGTCTTTGATCAGAACCCTGTTGCCATTTTTGGGGTTTCCAAGGTTCTCTTGCCGAGGGAGATTTTTGGTAGGAATCCGATGGTCACTGCCAAGCCTCTTGAAGGTGCTCCTCCGCCGGATGAGGATACTCTGTCACCAGAGAATTCGCCGGGATTTGGTGGACAGCCCTCACACCTATCATCACCGCCGGGGTTTCGCGAAGATGTGCGGTCACATGGTGGTGGGTGTGCCTTGCAGAGTAGCAAATTTCGTTTGGTACAGGAGTTTGTGCTGGTTGCTTCTTACTGTTATCTTACACCTAGATGA 1302 0.5691 MRSRSHYGFSITQNALALLYLFCIFTNPPASTALNFTALLSTVPDLSQFTALLASATPITADLSDRSSLSILAVPNAYLAADDHLARHHLSPAALADVLRYHVLLQFLSWSDLRALPPAGKLVTTLLQTTGRATDNFGSVNLTRDPQSGLVSIRSPAPYSPSNVTVLSLVKTLPYNVTIFAVNSLLIPYGLDLMASETRPNIVLNITKALIDGHNFNVAASMLAASGVVQEFEADEGGAGITLFVPVDDAFADLPPSVALQSLPADKKGVVLKFHVLHSYYPLGSLESVVNPFQPTLATEAMGAGSFTLNISRVNGSVAINTGIVQASVTQTVFDQNPVAIFGVSKVLLPREIFGRNPMVTAKPLEGAPPPDEDTLSPENSPGFGGQPSHLSSPPGFREDVRSHGGGCALQSSKFRLVQEFVLVASYCYLTPR* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0169 433 SMART fasc_3 242 351 IPR000782 -
Vra5g0169 433 MobiDBLite consensus disorder prediction 361 403 - -
Vra5g0169 433 SUPERFAMILY FAS1 domain 210 350 IPR036378 -
Vra5g0169 433 ProSiteProfiles FAS1/BIgH3 domain profile. 33 186 IPR000782 -
Vra5g0169 433 Pfam Fasciclin domain 215 350 IPR000782 -
Vra5g0169 433 Gene3D FAS1 domain 26 188 IPR036378 -
Vra5g0169 433 ProSiteProfiles FAS1/BIgH3 domain profile. 203 348 IPR000782 -
Vra5g0169 433 Gene3D FAS1 domain 204 351 IPR036378 -
Vra5g0169 433 SUPERFAMILY FAS1 domain 29 189 IPR036378 -
Vra5g0169 433 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 17 402 - -
Vra5g0169 433 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 402 IPR033254 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0169 Vra-Chr5 1375311 1380413 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0169 - - var:108321047 777.704