Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0142 ATGCAGAGTGGAAGAAGCAGAGGAAGCTCTGTGTTGTGTTTCTGTGAGTTTCCTACTGGACTCAGCTGCGGAGCAATGAGTCAGGAATCGTTTATATATAGTTTCGTGGCTCGTGGGACGATGGTGTTGGCTGAGTACACGGAGTTCACCGGAAACTTCCCTGCCATTGCAGCTCAGTGTCTTCACAAGCTTCCCTCTTCCAACAACAAGTTCACTTACAACTGTGACCACCACACCTTCAATTTTCTGGTTGAGGATGGTTATGCATACTGTGTTGTTGCTAAGGAATCTGTTGGGAAGCAGATCTCTATTGCTTTCCTTGAACGTGTGAAAGCAGACTTTAAGAAAAGATATGGTGGTGGAAAAGCAGATACAGCTATTGCTAAGAGTCTGAACAAGGAGTTTGGACCAGTTATGAAAGGGCACATGAAGTATATCATCGATCATGCTGAAGAGATTGAAAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTCAAGAGTATTATGTTAGAAAACATAGACAAGGCAATTGATAGAGGAGAAAATCTAACTATTCTTGCAGATAAGACAGAGACATTGCGTTCACAGGCTCAAGATTTCAGAAAGCAAGGAGCACAAGTCCATCGAAAGATGTGGTATCAGAACATGAAAATTAAACTAGTTGTTCTGGGAATTTTGTTGTTTTTGGTATTGGTTATCTGGCTTTCTATTTGTGGTGGATTTGACTGTACAAACTAG 741 0.413 MQSGRSRGSSVLCFCEFPTGLSCGAMSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLHKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVGKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEFGPVMKGHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTILADKTETLRSQAQDFRKQGAQVHRKMWYQNMKIKLVVLGILLFLVLVIWLSICGGFDCTN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0142 246 ProSitePatterns Synaptobrevin signature. 173 192 IPR001388 GO:0016021|GO:0016192
Vra5g0142 246 Pfam Regulated-SNARE-like domain 57 135 IPR010908 -
Vra5g0142 246 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 724 26 245 - -
Vra5g0142 246 Gene3D - 152 239 - -
Vra5g0142 246 CDD R-SNARE 154 213 - -
Vra5g0142 246 Pfam Synaptobrevin 154 240 IPR042855 -
Vra5g0142 246 SUPERFAMILY SNARE fusion complex 151 217 - -
Vra5g0142 246 ProSiteProfiles Longin domain profile. 35 139 IPR010908 -
Vra5g0142 246 PANTHER SNARE PROTEINS 26 245 - -
Vra5g0142 246 SUPERFAMILY SNARE-like 31 145 IPR011012 -
Vra5g0142 246 Gene3D Longin domain 21 151 - -
Vra5g0142 246 SMART Longin_2 56 138 IPR010908 -
Vra5g0142 246 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 155 215 IPR042855 -
Vra5g0142 246 PRINTS Synaptobrevin signature 160 179 IPR001388 GO:0016021|GO:0016192
Vra5g0142 246 PRINTS Synaptobrevin signature 180 199 IPR001388 GO:0016021|GO:0016192
Vra5g0142 246 PRINTS Synaptobrevin signature 216 235 IPR001388 GO:0016021|GO:0016192
Vra5g0142 246 CDD Longin 32 145 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0142 Vra-Chr5 1154341 1156253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0142 26 245 Miscellaneous Gene Families AT1G04760 68.182 3.68e-110 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0142 K08511 - gmx:100527252 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0142 5 1154341 1156253 Vra5g0142 5 1154341 1156253 ECH
Vra7g2854 7 48676128 48679261 Vra5g0142 5 1154341 1156253 PCT