Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0135 ATGCTGGAGCGGTGCCTGGGGACGCGGCGCGTGCGGCAGATTCATCGCGCGTGCCGGCACAGTACGGTGACTTTCCTCTGCCTCTTCCTCACGGTGGTCGTCCTCCGCGGCACAATAGGCGCTGGCAAGTTCGGTACGCCGGAGCAGGACTTCAACGAGATCCGCCACCATATCTCCGCCGCCCGCGCCCGCCGCGTCCTCGAGGAGACCAAACCTGACGCCGGTGCCAACGCCGATTCCAACCCTAACAACTACGCCACCTTCGATCTCTCTAAGATCCTCGTGGATGAGCCTCCCACGGAGGACGAAAAGCGTGACCCAAATGCTCCCTACACTCTCGGACCCAAAATCTCCGATTGGGATGAACAGCGCCGAGCCTGGCTCCGAGCCAACCCTGAGTACCCTAACTTCATACGACCCAACAAGCCACGTGTACTTTTAGTGACCGGTTCGTCCCCCAAACCGTGTGAAAACCCGGTCGGTGATCACTACCTTGTGAAATCGATCAAGAACAAGATTGACTATTGTAGGGTTCATGGGATTGAGATTTTCTACAACATGGCTCTTTTGGACGCTGAGATGGCAGGGTTTTGGGCCAAGCTTCCCTTGATTCGTAAACTTTTACTGTCGCACCCTGAAGTGGAGTTTCTCTGGTGGATGGACAGTGATGCAATGTTCACCGACATGGCTTTTGAGGTTCCCTGGGAGAGGTACAAAGATTCCAACTTTGTTATGCATGGGTGGAATGAGATGGTGTATGATGAGAAGAATTGGATTGGGTTGAACACTGGGAGTTTTCTTTTGAGGAATTGCCAATGGTCTTTGGATATTCTCGATGCTTGGGCTCCTATGGGGCCTAAAGGGAAGATTAGGGATGAGGCTGGGAAAGTGCTCACTAGGGAGCTTAAGAATAGGCCTGTTTTTGAAGCTGATGATCAATCTGCTATGGTTTATTTGTTGGCCACTGGGAAGGAAACATGGGGTAAGAAGGTTTACCTTGAGAATCATTATTACTTGCACGGGTATTGGGGAATTTTGGTGGACCGTTATGAGGAGATGATTGAGAATTATCATCCGGGACTTGGGGATCATAGATGGCCTTTGGTGACCCACTTTGTGGGGTGCAAGCCTTGCGGGAAGTTTGGGGATTACCCTGTGGAGAGGTGCTTGAAGCAGATGGATAGGGCTTATAATTTTGGGGATAACCAGATTTTGCAAATGTATGGCTTCACTCACCAGTCCCTTGCTAGTCGCAGAGTGAAGAAAGTGAGGAATGATACTAGCAACCCTCTTGAGGTCAAGGATGATCTTGGGTTGCTTCACCCTGCTTTCAAAGCTATCAAGCTCCCTTCTTCTTGA 1359 0.5107 MLERCLGTRRVRQIHRACRHSTVTFLCLFLTVVVLRGTIGAGKFGTPEQDFNEIRHHISAARARRVLEETKPDAGANADSNPNNYATFDLSKILVDEPPTEDEKRDPNAPYTLGPKISDWDEQRRAWLRANPEYPNFIRPNKPRVLLVTGSSPKPCENPVGDHYLVKSIKNKIDYCRVHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDSNFVMHGWNEMVYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRDEAGKVLTRELKNRPVFEADDQSAMVYLLATGKETWGKKVYLENHYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHQSLASRRVKKVRNDTSNPLEVKDDLGLLHPAFKAIKLPSS* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0135 452 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 141 296 IPR029044 -
Vra5g0135 452 Pfam galactosyl transferase GMA12/MNN10 family 142 381 IPR008630 GO:0016021|GO:0016757
Vra5g0135 452 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 4 451 IPR008630 GO:0016021|GO:0016757
Vra5g0135 452 PANTHER - 4 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0135 Vra-Chr5 1129170 1131061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0135 1 452 Glycosyltransferase AT3G62720 75.983 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0135 K08238 - gmx:100818287 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0135 5 1129170 1131061 Vra5g0135 5 1129170 1131061 ECH