Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0127 ATGTTAGACCTCAAGAACATATGGGTGCTTGTTTCTATCAACAGGTTCATTCAAGACACTTTGGAAGATGAGAAGACCAGGAATGGTCTGAAATTGAGATGCACCTCCAGGTTAAGGATTCAAAAGCAGGAATTTTTTGAATTCTCTGAGCAGTCAGTGTTGTCCAATCTTTACTGGGGCATTGACAGCATTGAGGCCGCCATTGAAGCTCAACAGCCAGAAGATAGATCCTTCAGGCTAATGAACTCAGAACAAATGCTTCAGGTGCCTGCAATGCTTGAAGAGGAAGAGGTCACAGCCACAATTCCAAACCGTTACTTGGTGTGCTGCTCCTACTTTTACCTCTCAGTGGTCAGGAAGCTCCAGGGAGATGAGTGGCAGGCAGCACTGCATTTTCTCCAAGCAGTGTTGGTATCACCAAGGCTTGTTTGGACAGAATTTGCATCACAACTTTGTGAAAGTCTTTTCCCCCAATCAAGCATTCGCATGGTGCAGGGTAACTGCAGCAGTAGAAGTTTGGAATCTGTGTCTTCTGAGGATGAAGTGGATGAAGCAATCAGGGAGGTGGCAAGGAGGTACAAGGAGTGTCTGGTGTATTACCAGGTCATGCTTTATGGAGAAAATCCATGGTGGCGGAGTTATTGCAGCAAACAATCACCACGATCTGTGGATGTGCCAAATACTAGCTGTGTTTCTCCTACTTCAGTTCAACATGAATCAAGATTGAAAAGTTGCAATATGTATAAAAAGGTTCATCCACTTGATTCTCAAGATGTGATGCATACAATGGAACATGAATCAAACCAATTCATGGATATTGCTGAATATGAAGGTGATAAGAAGGCCCTTAAACAACTTAAGTCAGTTGATTATCACGACAAAGAGATCCAAACAATTTCAAGTATCAAAGATTTCAAAGATATGATGATAGAGGCACGCTCTAAGACACCAGTGTCAGTGGATGCATTCTATAAGGATTTTAGAGCCAGAAAGAACATGGAAAATGTGGATGACAGAAAAATTTATATACAGACCACAATAACTACAGCAGATGATCTACCACCAGAAATCCACAACTGGAAGCTACAGCAACACTCTGGTTTGCCTCAAGCTCATCAACATCCTATTCAAGAACAGTTGGACAAGAAAAACATAATTAAGCTTGATTCTAGTAGATTCAACAGGTCCATAGAAGATATTACTTTATCTATCTCAAAATACAGAGATAAAACTGGAAATGCTCCCTTAAATTGTCTTGGAGAGGATGAACTAAATGAGGAAGCATTGAAGCCAAAAAAATTGTTCGATCATGTAACATTTACACCTGCTTGCAAACATAGGCCCAGCCAGAAAAATCAGGAAAATTCAGAGACACAAAGAGTGTATAGCCTACGAAAGTTTGATGAACTTTGTCCAAGCTCCAGAAGATATTCCCTGCAAGACTTGTCAGAACTGACTGAAAGGAGGATTAGAGAGCTACACTATTCAGAGGTATTAGGAAAATGTGATGAAGAATATACTGTAGACATTGCATCAATTTATGAGAACCTGATTAATTCATCCGGCGCTACTTATGCTTCCTTAAAGGATGTGATTTTGGATGAGCTGCTAATAGCTATCTCTACTTCCAAAGAGGAAAGAAAAATAAGGGCATCAGTGTCTATTCTGACAACAATAATTTCAAGGAACAAGTCAATCATAGAAGATGTCAAGAAGAAAGGCTTAAGGCTGTGTGATCTTGCAAGTGCTCTAAAACAAAATGTCCATGAGGCAGCAATTCTAATTTATTTGATAAATCCTTCTCCTATAGATATAAAAACATTGGAACTTCTGCCAATATTAGTGGAGATTGTATGCACTTCAAATAGTTACAAGAATAGGCCAGAGTCACTTCTTTTGACACCTCATGCAGCATCGTTGATGATCATTGAAGAGCTAGTAACTTCATTTGACTATGCCACAAATAACATGCATTTGGCTACCATCAGTTCTCCTCATGTTCTCAGTGGATTTCTAGAAGTTGCCAGGAATGATAACCTAGAAGAATTTTTTTCTTTAACCACCATTCTTATAAAATGCATGCAGTATGATGCCCAGTGCAGACAGTATGTATCACAATTCACTCCACTTGCTCCCTTTATCCACCTTTTGCAGTCAGAAAATATCCGCGCCAAATGCACGGCTCTTGAGTTTTTTCATGAAATCCTTTGTATACCACGATCGTCGGCTATTAGTCTGTTGCAACGAGTACAGCAAGAAAGAAACATCAATATTATGCAGATACTAATGCATTGTGCACATCAGTTACAACCTGATCATCGGCTTTTAGCAGCAAATATTTTGCTTCAGTTAGACATACTGAACTCTCCTGATAAAGGTGTGTTTAGAGAAGAAGCAGTGCAAATCCTTCTCAGGGCAATGACATCAGAAGAAAGCTCAGAGCAGATATTATCTGCATCCATTCTATCAAATCTGGCTGGTACGTATGCTTGGACAGGAGAGCCATATACAACTGCATGGTTGTTGAGAAAGACAGGTTTGACCTCTTCCTATCACCAGAATATGATAAGGAACTTCAACTGGTTGGATACGAGTCTACAGGATACTAGCACAGATTTGTGGTGCAGTAAAATTGCAAAATGTATCATAAGCCTTGGGGATTCTGTCTTCCATACTTTAGATAGGGTTCTTAGAAGCAAGATAAAGAGGGTTTCTAGAGATTGCCTAGTAGCAATTGCATGGCTTGGATGTCATATATCAAAAAGTCCAGACAGCATCAGTTATTATGCATCTGAGATTATACTAAGTGGAGTTGAGCAGTTTCTGCATCCTGGGATGGAGTTGGAGGAAAGACTTCTAGCATGTATGTGCATGTTTAATTATGCCTCCGGAAAAGGAAAGCAAAAACTGATGCATTTCTCCGAAGGAGTAAAGGAATCACTAAGGCGGCTTTCAAATGTTATTTGGATGGCTGAGGAACTACATAGAGTAGCCGATTTCTTGCTCCCAAACATATCACGTATTTCTTGCGTTCACACACAAATCCTTGAGGCAGGTTGCAGCTTCAGTTTAGCAGTTTGCTCCCTCATCTACTTCAAGGGATTGCTGTTCAGTGGGTATTCAGATGGAACAATCAAGGTTTGGGATGTTAGGGGACACTCAGCAAGTCTTATATGGGACATTAAGGAGCACAAGAAGTCTGTGACATGCTTTTCACTTTATGAACCATCTGACTGCCTTATAAGCGGATCCACTGATAAAACCATAAGGGTGTGGAAAATGATCCAGAGAAAGCTGGAATGTGTTGAAGTTATAGCATTGAAGGAACCAATTCATCATTTGCGAGCACATGGTGAAACAATTTTTGCTATTGCAGAAAGCCAGGGACTAAAGCTAGTTAATGAATCAAGAGTGACCAGAGATATTCTCAAAGGTAAGCATGTGAAGTGCATGACGGTGGCTCAAGGAAAGTTATATATTGGATGCACAGATTCAAGCATACAGGAGTATTCCACAACACACAACCGTGAACTAGAGATCAAACCCCCTACAAGGAGCTGGAGGAAGCAAAGTAAGCCCATCAATGCAGTTGTAGGATATAGAGACTGGCTCTACAGTGCAAATAAGCAAGTTGAAGGCACAACATTCAAGGAATGGAAAAGAACTAGGAAACCAAAACTTTCAATTCTTACTGACAAAGGAGATAATGTGGTGGCCATGGAAGTGGTAGAAGACTTCTTGTACCTAATCTCCAGCTCTTCACCAAACAACATTCAGATATGGTTGAGAGGGGCACCAAAAAAGTTGGGGAGAATATCAGCAGGAAGCAAGATAACAAGCATCCTTGCAGCCAATGACATCATTTTGTGTGGTACTGAGACGGGACTAATCAAGGGTTGGATCCCTCTGTAG 3912 0.4054 MLDLKNIWVLVSINRFIQDTLEDEKTRNGLKLRCTSRLRIQKQEFFEFSEQSVLSNLYWGIDSIEAAIEAQQPEDRSFRLMNSEQMLQVPAMLEEEEVTATIPNRYLVCCSYFYLSVVRKLQGDEWQAALHFLQAVLVSPRLVWTEFASQLCESLFPQSSIRMVQGNCSSRSLESVSSEDEVDEAIREVARRYKECLVYYQVMLYGENPWWRSYCSKQSPRSVDVPNTSCVSPTSVQHESRLKSCNMYKKVHPLDSQDVMHTMEHESNQFMDIAEYEGDKKALKQLKSVDYHDKEIQTISSIKDFKDMMIEARSKTPVSVDAFYKDFRARKNMENVDDRKIYIQTTITTADDLPPEIHNWKLQQHSGLPQAHQHPIQEQLDKKNIIKLDSSRFNRSIEDITLSISKYRDKTGNAPLNCLGEDELNEEALKPKKLFDHVTFTPACKHRPSQKNQENSETQRVYSLRKFDELCPSSRRYSLQDLSELTERRIRELHYSEVLGKCDEEYTVDIASIYENLINSSGATYASLKDVILDELLIAISTSKEERKIRASVSILTTIISRNKSIIEDVKKKGLRLCDLASALKQNVHEAAILIYLINPSPIDIKTLELLPILVEIVCTSNSYKNRPESLLLTPHAASLMIIEELVTSFDYATNNMHLATISSPHVLSGFLEVARNDNLEEFFSLTTILIKCMQYDAQCRQYVSQFTPLAPFIHLLQSENIRAKCTALEFFHEILCIPRSSAISLLQRVQQERNINIMQILMHCAHQLQPDHRLLAANILLQLDILNSPDKGVFREEAVQILLRAMTSEESSEQILSASILSNLAGTYAWTGEPYTTAWLLRKTGLTSSYHQNMIRNFNWLDTSLQDTSTDLWCSKIAKCIISLGDSVFHTLDRVLRSKIKRVSRDCLVAIAWLGCHISKSPDSISYYASEIILSGVEQFLHPGMELEERLLACMCMFNYASGKGKQKLMHFSEGVKESLRRLSNVIWMAEELHRVADFLLPNISRISCVHTQILEAGCSFSLAVCSLIYFKGLLFSGYSDGTIKVWDVRGHSASLIWDIKEHKKSVTCFSLYEPSDCLISGSTDKTIRVWKMIQRKLECVEVIALKEPIHHLRAHGETIFAIAESQGLKLVNESRVTRDILKGKHVKCMTVAQGKLYIGCTDSSIQEYSTTHNRELEIKPPTRSWRKQSKPINAVVGYRDWLYSANKQVEGTTFKEWKRTRKPKLSILTDKGDNVVAMEVVEDFLYLISSSSPNNIQIWLRGAPKKLGRISAGSKITSILAANDIILCGTETGLIKGWIPL* 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0127 1303 Pfam WD domain, G-beta repeat 1026 1049 IPR001680 GO:0005515
Vra5g0127 1303 Pfam WD domain, G-beta repeat 1060 1093 IPR001680 GO:0005515
Vra5g0127 1303 SUPERFAMILY ARM repeat 658 986 IPR016024 -
Vra5g0127 1303 SUPERFAMILY WD40 repeat-like 1024 1299 IPR036322 GO:0005515
Vra5g0127 1303 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1061 1094 - -
Vra5g0127 1303 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 1303 - -
Vra5g0127 1303 ProSiteProfiles Trp-Asp (WD) repeats profile. 1061 1094 IPR001680 GO:0005515
Vra5g0127 1303 Gene3D - 603 998 IPR011989 -
Vra5g0127 1303 SMART WD40_4 1009 1049 IPR001680 GO:0005515
Vra5g0127 1303 SMART WD40_4 1054 1093 IPR001680 GO:0005515
Vra5g0127 1303 SMART WD40_4 1223 1262 IPR001680 GO:0005515
Vra5g0127 1303 ProSiteProfiles Trp-Asp (WD) repeats profile. 1035 1051 IPR001680 GO:0005515
Vra5g0127 1303 PANTHER OS04G0584500 PROTEIN 6 1303 - -
Vra5g0127 1303 Gene3D - 999 1302 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0127 Vra-Chr5 1050232 1058379 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0127 - - var:108321067 2462.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0127 5 1050232 1058379 Vra5g0127 5 1050232 1058379 ECH