Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0125 ATGGAACCTCGCAGTTTGTGTTGCTCATTGGAAATATTGACACAACATATGAACACTGTCACTGAGCTTATTATCTCACCTTGTCATTGTCTTGCAGTGCTTTTGGTAGCATGTGTTGCAACCCTCTACGCTGCATGCAGAAGAAAAACACCAATTTATTTGATAGACTTCAACTGCTACTGTCCACCCAGTTCTTATAGGCTACCGCTGGCCATGTTTGAAGAGAATCAATTTTATGATGATATGGACCCAGAGGCTGTTGCTTTCCAGTGCAAGATCATGGCCAAATCAGGATTCAGTGAGCTAACGTCCATTTCTCCATCTCTTGCACAGATACCCAAAATCAAAGCTCTCTCCTTTGCCCTTGAGGAGGCAGAGACAATCATGTGTTCAGTGATAAAAAACCTGTTTGAGAAGAACAAGATAAACCCTAAAACCATTGACATACTCATCACTAATAGCAGTGTCTTCTGCCCCACACCATCTCTCAGTGCCATGGTGGTTAACAGGTTCAGAATGAGGAGCAACATCATGAGTTTCAACCTATCTGGTATGGGATGCAGTGCTGGAATCATTTCAATGAGTCTAGCTAAAGACTTGTTGAGAGTTCATAGGAACTCACTAGCTTTAATAGTAAGCACTGAGACGCTGAGTCTGAATTGGTACACTGGTAAAGTCCCTTCTATGCTGCTATCTAATTGCCTATTCAGAATGGGTGGGGCAGCTATATTGATGTCTAGTAGGGTCCAAGATAGGCACAAGGCAAAGTATAAACTGCAGCATATTGTCAGAACAATCACTGCACAGGATGATGAATCTCATGGCTGTGTTTACCAACAAGTGGATCCAGAGGAGAAAGAAGGTGTATCCATATCAAAGAGCATAGTTAATGTGTCTGGAGATGCACTGAAGAAAAATATAGCTTCACTAGGACCATTGGTTCTGCCTTTGAGGGAGCAATTCTTGTATTTATTTTCCATAATTTGTCGAAAAATGTGGAGTACAGGAAGAATAAGCATCTACACTCCAAATTTCAACCATGCTTTTGAGCATTTCTGCATACATTCAGGGGGAAGAGCCATCATTCAAGCGGTTGAAAGAAACTTAAGGCTAAGGAAACAGGACGTGGAGCCATCAAGCATGACTCTCTACAGGTTTGGAAATATTTCATCATCTTCAATTTGGTATGAGCTGAGCTACATAGAAGCAAAAGGGAGGATGAAATGTGGGGACAGGGTGTGGCAAATTGCCTTTGGAAGTGGATTCAAGTGTAACAGTGCAGTGTGGAAATGTGTTTGTGACATGAAGCCAGACACCTCCACTGCATGGAGGGATACAATTCATTCCTACCCAGTGGATAATATTATGAGAACAAACTGA 1380 0.4203 MEPRSLCCSLEILTQHMNTVTELIISPCHCLAVLLVACVATLYAACRRKTPIYLIDFNCYCPPSSYRLPLAMFEENQFYDDMDPEAVAFQCKIMAKSGFSELTSISPSLAQIPKIKALSFALEEAETIMCSVIKNLFEKNKINPKTIDILITNSSVFCPTPSLSAMVVNRFRMRSNIMSFNLSGMGCSAGIISMSLAKDLLRVHRNSLALIVSTETLSLNWYTGKVPSMLLSNCLFRMGGAAILMSSRVQDRHKAKYKLQHIVRTITAQDDESHGCVYQQVDPEEKEGVSISKSIVNVSGDALKKNIASLGPLVLPLREQFLYLFSIICRKMWSTGRISIYTPNFNHAFEHFCIHSGGRAIIQAVERNLRLRKQDVEPSSMTLYRFGNISSSSIWYELSYIEAKGRMKCGDRVWQIAFGSGFKCNSAVWKCVCDMKPDTSTAWRDTIHSYPVDNIMRTN* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0125 459 Pfam FAE1/Type III polyketide synthase-like protein 46 332 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra5g0125 459 SUPERFAMILY Thiolase-like 260 431 IPR016039 GO:0016746
Vra5g0125 459 PANTHER 3-KETOACYL-COA SYNTHASE 18 453 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra5g0125 459 CDD CHS_like 31 429 - -
Vra5g0125 459 SUPERFAMILY Thiolase-like 39 248 IPR016039 GO:0016746
Vra5g0125 459 Gene3D - 77 431 IPR016039 GO:0016746
Vra5g0125 459 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 18 453 - -
Vra5g0125 459 PIRSF Very_long_ch_3-ktacl-CoA_syn 5 459 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra5g0125 459 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 349 430 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0125 Vra-Chr5 1039992 1041602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0125 12 452 Acyl Lipid Metabolism Gene Families AT1G71160 52.262 1.35e-165 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0125 K15397 - gmx:100783404 836.254