Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0124 ATGATAAGTTGTCGACATGGAAGTAGCAAGTTTGGTTGTTTTGGTAAATCATGGAACAATGTTCATTCTTCCTTTCATTCCCTCTCATCATCAACATTTCACAGTTCAGTCACAGCCACAGATCCTACAGTACTCCACCGAGTTCTCCAAAGCTGCAGAGGTTCTATGGATTTAAAAACTGCTACTAAAACCCATTCGAGAGTTGTTGTACTTGGCCTTGCCACTTACCCTTCTCTTGTGTCATCTCTCATATCAACCTATGCTCGTTGCCACCAACCCCAGATTGGTCTTCGCGTTTTCTCCAAGGTTTTGGACCTCTTCAGCAGGAATCTGGTGGTTGACTGTTTGATGAAAGGGGGACAATGTGATGTTGCCAAGAAGGTGTTTGTCAAAATGCCTGTCAGAGATGTGGTCACTTGGAACACCATGGTTGGAGGTTACGTCAAAAACTCGCGCTTCCTGGATGCGTTGAACCTTTTCCGGAGGATGCCGAGTTGCAAGGTTGAGCCTGATGGGTTCACCTTTGCTGCTGTGTTAACTGCATGTGCTCGCCTTGGGGCTCTTTGCAATGCCGAGTGGGTGCATGGTTTGATGGTTGAGAAGAGGGTTGAGCTGAATTATATATTGAGTGCTGCTTTGATTGACATGTATGCTAAGTGTGGTAGGATTGATGTTTCAAGACAGGTTTTTGAGGAGGTTGTGCGTGATCATGTGTCGGTTTGGAATGCTATGATTACTGGGTTGGCAATTCACGGACTTGTAATGGATGTCACTCTGCTTTTTTCAAGGATGGAGATAGAGAGTGTTTTGCCAGATTCTGTTACTTTTATTGGGATTCTGACTGCTTGTAGCCATTGTGGATTGGTTGAAGAAGGTCGGGAGTATTTTGATATGATGCAGAACCGTTTCATGATTCAGCCAGAGCTGGAGCATTATGGAACCATGGTTGATCTACTGGGACGAGCAGGGCTAATGGAAGAAGCCCATGCTCTGATTAAGGCGATGCCTATGGAGCCTGATGTTGTTATATGGAGAGCACTTTTGAGTGCTTGTAGAATACACAGAAAGAAAAAACTTGGTGAAGTTGCGATTGCAAATATATCTCGCCTAGAGAGTGGAGACTTTGTGCTGTTGTCAAATATGTATTGCTCTTTAAAGAACTGGGATAGTGCTGAGAGGGTGAGGCAGAGGATGAAAATAGGAGGGATTCGGAAAAACCGTGGTAAAAGTTGGATTGAATTAGGGGACAGCATTCACACATTCAATGCAGCTAATCATTCACATGCAGAAATGAAATCAATATACCGAGTGTTGGAAGGTTTGGTCCAAAGAGCTAAGTTGGAGGGATTCACACCCTTGACGGATCTGGTTTTGATGGACGTGTCTGAAGAGGAAAAGGAGGAGAATTTAGCATTTCACAGCGAGAAGTTAGCCTTGGCCTATGGGGTTCTGAAAAGTAGCCCTGGAACCAAAATCAGGATTTCTAAAAACTTGCGAATCTGTCTTGACTGTCACAACTGGATTAAAATTGTATCAAAAATATTAAACCGAGAGATAATTGTGAGGGATCGAATTCGTTTTCACCAATTTGAAGGTGGTAAGTGCTCTTGCAAAGACTACTGGTAG 1626 0.4367 MISCRHGSSKFGCFGKSWNNVHSSFHSLSSSTFHSSVTATDPTVLHRVLQSCRGSMDLKTATKTHSRVVVLGLATYPSLVSSLISTYARCHQPQIGLRVFSKVLDLFSRNLVVDCLMKGGQCDVAKKVFVKMPVRDVVTWNTMVGGYVKNSRFLDALNLFRRMPSCKVEPDGFTFAAVLTACARLGALCNAEWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVVRDHVSVWNAMITGLAIHGLVMDVTLLFSRMEIESVLPDSVTFIGILTACSHCGLVEEGREYFDMMQNRFMIQPELEHYGTMVDLLGRAGLMEEAHALIKAMPMEPDVVIWRALLSACRIHRKKKLGEVAIANISRLESGDFVLLSNMYCSLKNWDSAERVRQRMKIGGIRKNRGKSWIELGDSIHTFNAANHSHAEMKSIYRVLEGLVQRAKLEGFTPLTDLVLMDVSEEEKEENLAFHSEKLALAYGVLKSSPGTKIRISKNLRICLDCHNWIKIVSKILNREIIVRDRIRFHQFEGGKCSCKDYW* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0124 541 Pfam DYW family of nucleic acid deaminases 449 541 IPR032867 GO:0008270
Vra5g0124 541 Gene3D Tetratricopeptide repeat domain 74 209 IPR011990 GO:0005515
Vra5g0124 541 Pfam PPR repeat 274 301 IPR002885 -
Vra5g0124 541 Pfam PPR repeat 311 336 IPR002885 -
Vra5g0124 541 Pfam PPR repeat 240 265 IPR002885 -
Vra5g0124 541 Pfam PPR repeat 212 236 IPR002885 -
Vra5g0124 541 Pfam E motif 355 413 IPR046848 -
Vra5g0124 541 TIGRFAM PPR: pentatricopeptide repeat domain 138 171 IPR002885 -
Vra5g0124 541 Pfam PPR repeat family 135 184 IPR002885 -
Vra5g0124 541 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 487 - -
Vra5g0124 541 PANTHER OS07G0578800 PROTEIN-RELATED 24 487 IPR045215 GO:0003723|GO:0009451
Vra5g0124 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Vra5g0124 541 Gene3D Tetratricopeptide repeat domain 211 434 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0124 Vra-Chr5 1035286 1038048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0124 81 541 Glycoside Hydrolase AT3G49170 37.526 4.92e-106 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0124 - - gmx:100788229 912.524