Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0103 ATGAAATCTTTAAACCAAGAATTGATGTTTCTCATTCTTCAATATCTTGACGAGGAGAATTTTAAAGACACTGTGCACAAGTTAGAACAAGAATCAGGATTGTTCTTCAATGTTAAATATTTTGAAAAGAAAGTTTTGGCTGGAGAATGGGACGATGTTGAGAAATACCTATTTGGATTTACAAAAGTTGATGACAATCGATACTCCATCATGACATTCTTCGAGATTAGGAAGCAAAAATATCTAGAAGCTCTAGATAGACGAGACAGAGTGAGAGCTGTTGAAATTCTAGTGAATGATTTGAAAGTTTTTCAATCATTCAATGAATATTTGTTCAAAGAGATCACCAATCTTCTAACCCTCAATAATTTTAGGGAAAATGCACAATTATCAAAGTATGGTGACACTAAATCAGCTCGAAATATATTGGTAATAGAGCTTAAAAGATTGATTGAAGCAAATCCTATCTTTCAAGATAAACTCACATTTCCTTCAATTAAAACATCTCGGTTAAGAACCTTGATTAATCAAAGTGTGAATTGGCAGCATCAGTTGTGCAAGAATCCAATGCCAAATCCAAACATTAGAACTTTATTCATTAACCATTCTTGTTCACCTACAAATGGATCTCCTTCACTTGGAGCACATGTTGGGCCATTTACACCATCCCAATCTGCATCTCATGTTAATACTTTAGTGGGATGGACATTGAATGAGATTCAGTCCACATCTTCCCAAATACCAGTAGGTGTTGCTTCCTCATTGTCTGCTCCCACACATCAAGCCTCCAATGCTCTTGGAATGTTGGATTATCTACACAATGATCAAGGACAACTAATGACACAAATGCGAACTACACAACGACATGTAGAAGAGGCTACTTACAATGCTACACCGCAGCAAACATCTTCCATTTTGGATGATCTTCCTAAAATTGTTGTTTGTACATTGCAACAAGGTTCAACAATTACAACAATGGATTTTCATCCTTCTCTTCATTCATTACTTGCTGTTGGTTGTGCAAATGGTGACATTTCACTTTGGGAAGCAGGGCATCAACAAAGAATTTTATCAAATCCTTTCAAAATATGGAATATTTCTATTTGCTCTGTCTTATTTCAGATCGATGCTCACGTTGGTGGTGTTAATGACTTGGCTTTTTCTAATTTGAACAAGCAGTTATGTATTATAACTTGTGGAGATGACAAGTTAATAAAGGTATGGGATTTGAACGGAAAAAGGCTTTTCAACTTTGAAGGTCATCAAGCACCTGTTTATTCTATCTGTCCTCATCAAAAGGAAAATATTCAGTTTATGTTTTCAACTTCTATTGATGGGAAAATCAAGGCATGGTTATATGATAACATCGGCTCTCGATTGGACTACGATGCTCCTGGACAGTGGTGCACCAGAATGCTCTATAGTACTGTCGAAAATAGACTGTTCTCTTGTGGGACAAGTAAAGATGGAGATTGTTTCCTAGTTGAGTGGAATGAAAGAGAAGGATCACCAAAGAGAAGATATTTTGGGTTTGGAAAGAAATGTAATGGAATTGTGCAATTTGACACAACAAAGGGTCGTTATTTGGCTGCTGGTGAAGATAATCAGATTAAGTTTTGGGATATGGATAATGTCAATGTCTTGTTTAGTACAGATGCTGAGGGAGGTCTTCCTAATCTCCCTCGTTTGAGATTCAATAAGGAAGGAAATTTGCTTGCTGTTACAACATCAGATGGTGGTTTCAAAGTCCTTTCTAATTCTGAGGGCATTAAATACTTTAGATCTCATCAAACACTTAAAGCTCCACTTGGAACAAAGAATGGGACTGATTCTATTCCTAGATGCATAGAGAGGAAAGGAAGTTTTGATTATGCATCGCACAAGTCTAAAGTTTGGGAAACAGCAGAAATAATTGACCCCATTCAGTGTAGAACAATTACTCTCACAGATAGTGCAGATCCCACTAACAAGGTTGTTCGCCTTATTTACACAAATTCTGGAGTTAGTCTCATTGTTCTTGGCTCAAAAGGGATTCAGAGGTTGTGGAAATGGAGTCGTAATGAATTGAATCCAAATGGAAAGGCCACAGCAAGTGTTGTTCCACAACTTTGGGAACCAAATAATGGTATTGTGATGATTAACGATGTCCCAAACTCTTCTGAAGCAATATATCCCTGCATGGCACTCTCAAAGAATGATTCCTATGTTATGTCTGCATGCGGAGGAAAAATTTCATTGTTCAACATAATGAGTTTTAAGGTTATGACAACTTTTATGCCACCTCCACCTATTCCGACCTGTCTGGCATTTCATCCTAAAGATAACAATATTGTTGCAATTGGGATGAATGATTCAACAGTTCACATTTATAATGTCAGGGTGAATGAGGTCAAATCTAAATTGAAAGGTCATCATCATGAGTGTATCACTGGTTTAGCTTTTTCAGCTCGACTCAATATATTGGTTTCATCTGGTGCTGATGCTCAGCTTTCTTTTTGGAGCATTGACTCGTGGCATAAGAAGAAATCAGTATCAATTCAAATGCCTAATGGAAATACACTTGTTGGTGATACTCAAGTGCAATTCAACAATGATCAAGTACGCTTGTTGGTGTGCCATGAGAGTCAACTTGCAATATATGATGCTTTTAGAATGGAATTGATTCAAAGGTGGGTAGCACAAGAGTGGTTGATCGGTTCCTTATCATGTGCAACATATTCATGCAATAGCCAACTAGTTTATGCTGCTTTCCTTGATGGAAATATTGGAATATTTGAAGGGAACACACTCAAGGTCAAATGTCGTATGGCTTCATCAGCATACCTACATCAACCCACAATAATAAGGCAAAATGTGTATCCTATAGTTGTTGCAGCTCATCCTGATGAGCCTAATCAATTTGCAATTGGACTTTCTGATGGCTCAATTAAGGTTATTGAGCCTAGGGACTGTGATACCAAATGGGGAAATTATTAA 2976 0.371 MKSLNQELMFLILQYLDEENFKDTVHKLEQESGLFFNVKYFEKKVLAGEWDDVEKYLFGFTKVDDNRYSIMTFFEIRKQKYLEALDRRDRVRAVEILVNDLKVFQSFNEYLFKEITNLLTLNNFRENAQLSKYGDTKSARNILVIELKRLIEANPIFQDKLTFPSIKTSRLRTLINQSVNWQHQLCKNPMPNPNIRTLFINHSCSPTNGSPSLGAHVGPFTPSQSASHVNTLVGWTLNEIQSTSSQIPVGVASSLSAPTHQASNALGMLDYLHNDQGQLMTQMRTTQRHVEEATYNATPQQTSSILDDLPKIVVCTLQQGSTITTMDFHPSLHSLLAVGCANGDISLWEAGHQQRILSNPFKIWNISICSVLFQIDAHVGGVNDLAFSNLNKQLCIITCGDDKLIKVWDLNGKRLFNFEGHQAPVYSICPHQKENIQFMFSTSIDGKIKAWLYDNIGSRLDYDAPGQWCTRMLYSTVENRLFSCGTSKDGDCFLVEWNEREGSPKRRYFGFGKKCNGIVQFDTTKGRYLAAGEDNQIKFWDMDNVNVLFSTDAEGGLPNLPRLRFNKEGNLLAVTTSDGGFKVLSNSEGIKYFRSHQTLKAPLGTKNGTDSIPRCIERKGSFDYASHKSKVWETAEIIDPIQCRTITLTDSADPTNKVVRLIYTNSGVSLIVLGSKGIQRLWKWSRNELNPNGKATASVVPQLWEPNNGIVMINDVPNSSEAIYPCMALSKNDSYVMSACGGKISLFNIMSFKVMTTFMPPPPIPTCLAFHPKDNNIVAIGMNDSTVHIYNVRVNEVKSKLKGHHHECITGLAFSARLNILVSSGADAQLSFWSIDSWHKKKSVSIQMPNGNTLVGDTQVQFNNDQVRLLVCHESQLAIYDAFRMELIQRWVAQEWLIGSLSCATYSCNSQLVYAAFLDGNIGIFEGNTLKVKCRMASSAYLHQPTIIRQNVYPIVVAAHPDEPNQFAIGLSDGSIKVIEPRDCDTKWGNY* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0103 991 Gene3D - 462 616 IPR015943 GO:0005515
Vra5g0103 991 SUPERFAMILY WD40 repeat-like 320 593 IPR036322 GO:0005515
Vra5g0103 991 Gene3D - 301 455 IPR015943 GO:0005515
Vra5g0103 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 519 550 IPR001680 GO:0005515
Vra5g0103 991 SUPERFAMILY WD40 repeat-like 726 984 IPR036322 GO:0005515
Vra5g0103 991 SMART ctlh 34 92 IPR006595 -
Vra5g0103 991 Gene3D - 645 986 IPR015943 GO:0005515
Vra5g0103 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 802 843 IPR001680 GO:0005515
Vra5g0103 991 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 374 IPR027728 GO:0006355
Vra5g0103 991 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 602 990 IPR027728 GO:0006355
Vra5g0103 991 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 375 597 IPR027728 GO:0006355
Vra5g0103 991 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Vra5g0103 991 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vra5g0103 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 411 IPR001680 GO:0005515
Vra5g0103 991 Pfam WD domain, G-beta repeat 374 409 IPR001680 GO:0005515
Vra5g0103 991 Pfam WD domain, G-beta repeat 799 834 IPR001680 GO:0005515
Vra5g0103 991 ProSitePatterns Trp-Asp (WD) repeats signature. 396 410 IPR019775 -
Vra5g0103 991 SMART WD40_4 794 834 IPR001680 GO:0005515
Vra5g0103 991 SMART WD40_4 944 980 IPR001680 GO:0005515
Vra5g0103 991 SMART WD40_4 411 452 IPR001680 GO:0005515
Vra5g0103 991 SMART WD40_4 751 791 IPR001680 GO:0005515
Vra5g0103 991 SMART WD40_4 884 926 IPR001680 GO:0005515
Vra5g0103 991 SMART WD40_4 310 349 IPR001680 GO:0005515
Vra5g0103 991 SMART WD40_4 368 409 IPR001680 GO:0005515
Vra5g0103 991 SMART WD40_4 501 541 IPR001680 GO:0005515
Vra5g0103 991 SMART WD40_4 717 748 IPR001680 GO:0005515
Vra5g0103 991 SMART Lish 4 36 IPR006594 GO:0005515
Vra5g0103 991 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 374 - -
Vra5g0103 991 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 375 597 - -
Vra5g0103 991 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 602 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0103 Vra-Chr5 815321 822833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0103 310 458 Miscellaneous Gene Families AT5G08390 29.444 3.63e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0103 - - vra:106760031 2023.82