Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0098 ATGGGAATTGTCACTACTGAAAGTGACCTAGTTTCTGCAGTGGCACCTGCAAGACTATACAAAGCCATTGTCCTTGATTCTTCCAATTTTTTCCCCAAAGCTTTACCAGACTTTGTTAAAAGTGTTGAAATCATTGAAGGAGATGGAGGGCCAGGAACCATTAAGAAGTTCAGTCTTCCTGAAGGTTATGTGAAGCAAAAGGTGGATGTGGTGGATGAAGATAACTATGTGTATCAGTACACAATAGTTGAAGGGAATCTTCTGACAGAGCCATTGGAGAAGGTGTCTAATGAGTACAAATTGGTGCCAAATTCTGATGGAGGATGCATTGTGAAGGCCACACGAAAATACTACACAAAAGGAGATGCTGAACTCACACAAGAGTTTCTCAAATCTACCAATGAGATGTCTGCAGTGTTTGCCAAGGCTGTTGATGATTATCTTTTGGCTAATCCTGATTACAACTAA 468 0.406 MGIVTTESDLVSAVAPARLYKAIVLDSSNFFPKALPDFVKSVEIIEGDGGPGTIKKFSLPEGYVKQKVDVVDEDNYVYQYTIVEGNLLTEPLEKVSNEYKLVPNSDGGCIVKATRKYYTKGDAELTQEFLKSTNEMSAVFAKAVDDYLLANPDYN* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0098 155 Gene3D - 1 155 IPR023393 -
Vra5g0098 155 PANTHER - 1 155 - -
Vra5g0098 155 SUPERFAMILY Bet v1-like 3 155 - -
Vra5g0098 155 CDD Bet_v1-like 5 148 - -
Vra5g0098 155 Pfam Pathogenesis-related protein Bet v 1 family 4 151 IPR000916 GO:0006952
Vra5g0098 155 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0098 155 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0098 155 PRINTS Major pollen allergen Bet V1 signature 62 81 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0098 155 PRINTS Major pollen allergen Bet V1 signature 81 94 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0098 155 PRINTS Major pollen allergen Bet V1 signature 106 122 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0098 155 PRINTS Major pollen allergen Bet V1 signature 140 150 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0098 155 PANTHER NODULIN-13 1 155 - -
Vra5g0098 155 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 85 117 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0098 155 SMART Bet_v_1_2 1 151 IPR000916 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0098 Vra-Chr5 789269 790037 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0098 - - aprc:113852251 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0098 5 789269 790037 Vra5g0098 5 789269 790037 ECH