Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0097 ATGGGAATTGTGACCACTGAACGTGAGCAAGTTTGTGCTGTGGCTCCTGCAAGATTATTCAAAGCCATGGCCTTCGATTTTGGCAATGTTCTTCCAAAAGCTATACCAAACTTAGTTAAGAGTGCTGAAATCATTGGAGACGGAGGACCTGGATCCATCAAGAAAATCGTTCTTGCTAATGGATATGTGAATCAAAAGGTTGATGTGGTGGACGAAGAAAAGTACGTGTACCACTACACAGTGGATGAAGGCAGTTTAATATCAGAGACATTGGAGAAGGTGTGCTATGAGTATAAATTGGAAGCAAACCCTAAGGGAGGATGCATGATCAAGTGCACAGTAAAATACCACACCAAAGGTGATGCACAACTCACAGATGAGTTTTTGAAGGTTAACAATGAAATATCTGCTGGGTTTACCAAGGCTGTTGAGGATTATCTTTTGGCTAATCCTGATTACAACTAA 465 0.4108 MGIVTTEREQVCAVAPARLFKAMAFDFGNVLPKAIPNLVKSAEIIGDGGPGSIKKIVLANGYVNQKVDVVDEEKYVYHYTVDEGSLISETLEKVCYEYKLEANPKGGCMIKCTVKYHTKGDAQLTDEFLKVNNEISAGFTKAVEDYLLANPDYN* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0097 154 CDD Bet_v1-like 5 147 - -
Vra5g0097 154 PANTHER - 1 154 - -
Vra5g0097 154 PANTHER NODULIN-13 1 154 - -
Vra5g0097 154 Gene3D - 2 154 IPR023393 -
Vra5g0097 154 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0097 154 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0097 154 PRINTS Major pollen allergen Bet V1 signature 61 80 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0097 154 PRINTS Major pollen allergen Bet V1 signature 80 93 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0097 154 PRINTS Major pollen allergen Bet V1 signature 105 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0097 154 PRINTS Major pollen allergen Bet V1 signature 139 149 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0097 154 Pfam Pathogenesis-related protein Bet v 1 family 6 150 IPR000916 GO:0006952
Vra5g0097 154 SUPERFAMILY Bet v1-like 2 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0097 Vra-Chr5 786553 787438 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0097 - - gmx:100812065 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0097 5 786553 787438 Vra5g0097 5 786553 787438 ECH