Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0082 ATGGCTTCTCGGCACCACACCAAATTACTAGCCATTGCGCTGGTGCTCTGCGTTGCACTGTCCTTCACAAGCCCAGCCCAAGGGAGGGCGCCCTTTGCATGCGACCCTAGGAACGGACTCACAAGGGGGTTCAAGTTCTGCAACACTAACGTCCCCATCCATGTCAGGGTTCAGGACCTCATAGCCAGACTCACATTGCCGGAGAAAATCAGGCTCGTGGTCAACAACGCCATCGCCGTGCCCAGGCTCGGTATCCAAGGCTACGAGTGGTGGTCCGAGGCGCTTCACGGCGTCTCCAATGTGGGCCCCGGCACTAAGTTCGGTGGGGCCTTCCCTGGCGCCACCATGTTCCCCCAAGTCATCACAACCGCTGCTTCCTTCAATCAATCTCTCTGGCGCCAAATCGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCCAATGTCAACATTTTTCGCGACCCACGGTGGGGCCGCGGCCAAGAGACTCCCGGCGAAGACCCAACCCTGGCCGCAAAATACGCCGCCAGCTATGTCCAAGGACTCCAAGGCGACGGCGCCGGAAACCGCCTCAAGGTCGCTGCTTGTTGTAAACACTACACTGCCTATGACCTTGACAACTGGAATGGTGTAGACAGGTTTCATTTCAATGCCAAGGTAAGCAAACAGGATCTGGAGGACACTTACGACGTGCCATTTAAAGCCTGCGTGTTGGAAGGACAAGTTGCGAGTGTGATGTGTTCTTACAATCAGGTGAATGGGAAGCCCACGTGTGCTGACCCTGATCTCCTTCGCAACACCATACGCGGACAATGGCGGCTCAATGGGTACATAGTCTCGGACTGTGACTCTGTTGGAGTTTTCTACGACAACCAACACTACACAAGAACACCCGAGGAGGCGGCAGCGGAGGCCATAAAAGCGGGCCTGGACTTGGACTGTGGCCCATTCTTGGCGATCCACACCGATGCTGCCATTAGGAAGGGACTCATTTCCGAAAACGATCTTAACCTTGCCTTGGCCAACCTTATCACGGTCCAAATGAGATTGGGCATGTTCGACGGCGAACCTTCGGTCCATCCATACGGAAACTTGGGCCCAAGAGACGTGTGCACCCAGGCCCATCAACAGCTGGCCCTTCAAGCAGCCAGAGAGAGCATAGTATTGTTACAAAACAAAAGAAACTCCTTACCACTATCTCCTGCGCGAATCCGCACCGTAGGAGTCATTGGACCCAATTCGGACGCCACCGTTACAATGATAGGGAACTACGCTGGTGTGGCGTGTGGTTATACCAGTCCTTTGCAAGGGATTGCCAGGTATGTGAAGACTTCTCATCAAGTTGGATGCAGGAATGTGGCTTGTAGGGGAAACGAACTATTTGGAGCAGCAGAGACCGTAGCTAAGCAAGTTGACGCCACTGTGTTGGTAATGGGCCTTGACCAGTCCATAGAAGCAGAAACCAGAGATAGACTTGGGCTTCTCTTACCAGGCCTTCAACAAGAGCTCGTTGCAAGGGTGGCTAGGGCCGCCAGAGGCCCAGTCATCTTGGTTATCATGTCAGGTGGCCCAGTTGATGTCACGTTTGCGGTAAATGACCCAAAGATCAGTGCCATTTTGTGGGTTGGTTATCCTGGTCAAGCCGGGGGAACTGCCATAGCTGACGTTATCTTTGGTCAAACTAACCCAGGAGGAAGATTACCGATGACATGGTACCCGGAAAAGTATTTGACTAAAGTACCGATGACAGTGATGGACATGCGTCCAAACTCAGCAACAGGGTACCCAGGAAGAACCTACAGATTCTACAAAGGACCTGTGGTGTTCCCATTCGGACATGGGTTAAGTTACTCGAGATTCAGCCACAGCTTAGCCATTGCTCCAAAAGAGGTGTCCGTGTCAGTGCCCTTAGCCTTGACAAACTCAAGCCTTTCAAGCGAAGCAGTGAGGGTGAGCCACGCCAGTTGTGATGATACATTGGAGATGGAATTCCACGTGGACGTCAAAAACGAAGGCTCCATGGATGGCACCCACACCCTTCTTGTATTCTCGAAACCACCACCTGGAAAATGGTCTCAGATCAAACAACTGGTGAACTTTCATAAGACCCATGTTCCTGCTGGGTCGAACCAGCGTCTGAAGGTTGGTGTTCATGTCTGCAAACATCTGTCCGTCGTCGACCAGTTCGGGATTCGAAGAATCCCATCTGGTGAACATGAACTCCACATTGGTGATATCAAACATTCTATTTCTGTCCAAACCGTTCAACAAATCAAGAACTGA 2319 0.5231 MASRHHTKLLAIALVLCVALSFTSPAQGRAPFACDPRNGLTRGFKFCNTNVPIHVRVQDLIARLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATMFPQVITTAASFNQSLWRQIGRVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVQGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWRLNGYIVSDCDSVGVFYDNQHYTRTPEEAAAEAIKAGLDLDCGPFLAIHTDAAIRKGLISENDLNLALANLITVQMRLGMFDGEPSVHPYGNLGPRDVCTQAHQQLALQAARESIVLLQNKRNSLPLSPARIRTVGVIGPNSDATVTMIGNYAGVACGYTSPLQGIARYVKTSHQVGCRNVACRGNELFGAAETVAKQVDATVLVMGLDQSIEAETRDRLGLLLPGLQQELVARVARAARGPVILVIMSGGPVDVTFAVNDPKISAILWVGYPGQAGGTAIADVIFGQTNPGGRLPMTWYPEKYLTKVPMTVMDMRPNSATGYPGRTYRFYKGPVVFPFGHGLSYSRFSHSLAIAPKEVSVSVPLALTNSSLSSEAVRVSHASCDDTLEMEFHVDVKNEGSMDGTHTLLVFSKPPPGKWSQIKQLVNFHKTHVPAGSNQRLKVGVHVCKHLSVVDQFGIRRIPSGEHELHIGDIKHSISVQTVQQIKN* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0082 772 PANTHER BETA-D-XYLOSIDASE 1 9 767 - -
Vra5g0082 772 Pfam Fibronectin type III-like domain 693 757 IPR026891 -
Vra5g0082 772 Gene3D Immunoglobulins 651 771 IPR013783 -
Vra5g0082 772 PRINTS Glycosyl hydrolase family 3 signature 117 136 IPR001764 GO:0004553|GO:0005975
Vra5g0082 772 PRINTS Glycosyl hydrolase family 3 signature 205 221 IPR001764 GO:0004553|GO:0005975
Vra5g0082 772 PRINTS Glycosyl hydrolase family 3 signature 279 297 IPR001764 GO:0004553|GO:0005975
Vra5g0082 772 Pfam Glycosyl hydrolase family 3 C-terminal domain 399 629 IPR002772 GO:0004553|GO:0005975
Vra5g0082 772 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 399 632 IPR036881 GO:0004553|GO:0005975
Vra5g0082 772 Gene3D - 384 630 IPR036881 GO:0004553|GO:0005975
Vra5g0082 772 Pfam Glycosyl hydrolase family 3 N terminal domain 111 328 IPR001764 GO:0004553|GO:0005975
Vra5g0082 772 SUPERFAMILY (Trans)glycosidases 45 398 IPR017853 -
Vra5g0082 772 Gene3D - 56 372 IPR036962 GO:0004553|GO:0005975
Vra5g0082 772 PANTHER SUGAR HYDROLASE-RELATED 9 767 IPR044993 GO:0009044|GO:0045493
Vra5g0082 772 SMART Fn3_like_2 690 759 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0082 Vra-Chr5 664990 670932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0082 10 765 Glycoside Hydrolase AT5G49360 72.084 0.0 1131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0082 - - gmx:100812823 1384.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0082 5 664990 670932 Vra5g0082 5 664990 670932 ECH