Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0081 ATGCAACATCTCTATATAGTATCTCTAAAAACCAAACAAACACGCCACACAGCAAAGCATTGTTCAAGGCAAAAGAAAGAGAGAAAGATGAGCCCAACATGGGTTTTTGTGGTGTGTGTTGCAGCCATGTTTGTGGTTGGGAATGGACAATCATCGGTGAAGCCATTGGTGAAGACAGTGAAGGGGAAGAAGGTGTGTGACAAAGGGTGGGAGTGCAAGGGTTGGTCTGCTTATTGCTGCAACGATACCATCTCTGACTACTTCCAGACCTACCAGTTTGAGAACCTCTTTGCAAAGCGCAATTCGCCGGTGGCACATGCCGTTGGATTCTGGGACTACCGTTCTTTTATCACTGCTGCAGCACAGTATCAGCCTCTCGGCTTTGGCACCACCGGAGGAACCACCAGTGGCCAGAAGGAGGTCGCCGCTTTCCTTGGCCATGTTGGCAGCAAAACCTCTTGTGGTTATGGGGTGGCTACTGGGGGACCCTTAGCCTGGGGTTTATGCTACAACAAGGAATTGAGTCCTGATAAATTCTACTGCGACGAATACTACAAATTGACATACCCTTGCACTCCTGGTGCAGCATACTATGGTCGTGGTGCCATCCCACTTTACTGGAACTACAACTATGGAAAAGCTGGGGAAGCCTTGAAGGTGGATCTGTTGAACCATCCAGAATACATAGAACAAAATGCAACCCTAGCCTTCCAGGCTGCATTGTGGCAGTGGATGAGCCCACCTGAGAAGCACCTACCTTCACCCCATGATGTGTTTGTTGGGAATTGGAAACCCAGCAAGAACGACACATTGTCGAAAAGGGTACCTGGATTTGGTGCCACTATAAATTTGCTCTATGGGGACCAAACTTGTGGGCAAGGACCTGATAATGAGGCGATGAACAACATCATTTCTCACTATCTTTATTACCTTGATCTCATGGGTGTTGGCAGAGAAGAAGCTGGGCCTAATGAAGTTCTCTCCTGTGCTGAACAAAAGGCTTTTAAGCCCTCTGGTTCACCATCTTCTGCCACAAATTGA 1041 0.4793 MQHLYIVSLKTKQTRHTAKHCSRQKKERKMSPTWVFVVCVAAMFVVGNGQSSVKPLVKTVKGKKVCDKGWECKGWSAYCCNDTISDYFQTYQFENLFAKRNSPVAHAVGFWDYRSFITAAAQYQPLGFGTTGGTTSGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKELSPDKFYCDEYYKLTYPCTPGAAYYGRGAIPLYWNYNYGKAGEALKVDLLNHPEYIEQNATLAFQAALWQWMSPPEKHLPSPHDVFVGNWKPSKNDTLSKRVPGFGATINLLYGDQTCGQGPDNEAMNNIISHYLYYLDLMGVGREEAGPNEVLSCAEQKAFKPSGSPSSATN* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0081 346 PIRSF Endochitinase 22 336 IPR016283 GO:0004568|GO:0005975
Vra5g0081 346 CDD chitinase_GH19 92 329 - -
Vra5g0081 346 PANTHER CHITINASE-RELATED 34 339 - -
Vra5g0081 346 Gene3D Endochitinase, domain 2 172 231 - -
Vra5g0081 346 SUPERFAMILY Lysozyme-like 84 335 IPR023346 -
Vra5g0081 346 PANTHER CHITINASE-LIKE PROTEIN 1 34 339 - -
Vra5g0081 346 Pfam Chitinase class I 92 319 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra5g0081 346 Gene3D - 92 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0081 Vra-Chr5 649200 651086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0081 51 335 Glycoside Hydrolase AT3G16920 81.053 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0081 - - vra:106760177 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0081 5 649200 651086 Vra5g0081 5 649200 651086 ECH