Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0079 ATGGGGACTACGCCTGAGGCTAACGGGAGTAATGTAGCGGACGAAGAAACCCTCGGCGGCTCAATTAATTTCGGCACGGCGGAGGCCGTCGAATATGTCCGTTCCCTCACCGACGTCGGCGCCATGACGCGCCTCCTCCATGAGTGCATCGCTCACCAGAGAGCTGTCGACGTTGAACTCGACGAGCTTCTCTCGCAGCGCACTGACCTCGACCGTCACCTTCTCCAGCTCCAGCGCTCCTCCGACGTTCTCGACATTGTCAACTCCGACGCTGAATACATGCTCTCCAACGTCGCCTCCACCTCCGACCTCGCTGACCAGGTCAGCCGCAAGGTGCGGGAGCTTGACCTGGCGCAGTCGCGCGTCCGCAACACGCTCCTCCGCATCGATGCCATCGTGGAGCGCGCCAACTCCCTCGAAGGCGTCCACCGTGCCCTCGAGGATGAGGACTATGAGTCCGCCGCGCGCTACGTCCAGACCTTCCTGCAGATCGACGCGCAATACAAGGATTCCGGCTCCGATCAGCTTCAGAGGGATCGCTTGTTGGCAGCAAAGAAGCAGTTGGAGGGAATTGTAAGGAAGAAGCTCTCTGCCGCTGTGGATCAGCGCGACCACCCCGCCATTCTCAGGTTCATTCGTCTCTTCACCCCACTGGGTGTGGAGGAGGAAGGATTGCAGGTCTATGTTGGGTACTTGAAGAAGGTGATTGCAATGAGGTCAAGAATGGAGTTTGAGCAGTTGGTGGAGACAATGGATCAGCGAAATGTCAATTTTGTTGGTTGTTTGACCAATTTGTTTAAGGACATTGTATTGGCAATTGAGGAGAATAGTGAGATCTTGAGTGGTCTTTGTGGTGAGGATGGTATTGTATATGCCATCTGTGAGCTTCAGGAGGAGTGTGATTCTCGTGGTTCTGCGATTTTGAACAAGTATATGGAGTATAGGAAGTTGGCCAAGTTGTCCTCTGAGATAAATGCACACAACACCAGTTTGCTTGCTGTTGGAGGAGGTCCTGAGGGTCCTGACCCACGAGAGGTTGAGTTATACTTGGAGGAGATTCTCTCCCTTATGCAGCTTGGTGAGGATTACACCGAATTCATGATTTCAAAGATCAAAGGGCTTACTTCTATTGATCCTGAGTTGCTTCCTCGTGCCACCAAGGCTTTCCGGAGTGGCAGTTTTAGCAAGGTTGCACAAGATTTAACCGGTTTTTATGTCATTTTGGAGGGATTTTTCATGTTGGAGAATGTCAGGAAAGCAATAAGGATCGATGAACAAGTGCCTGACAGCCTTACCACTTCCATGGTGGATGATGTGTTTTATGTATTGCAGAGTTGCCTGCGGAGGGCAATATCCACTTCCAATATCAGTTCTGTTGTTGCCGTTTTGAGTGGTGCCAGCAGTTTGCTCGGTAATGAATACCATGAAGCCTTGCAGCAAAAAATAAGAGAGACAAACCTTGGTGCAAAGTTGTTCTTTGGTGGTGTTGGTGTGCAAAAGACAGGTACAGAAATTGCAACAGCTTTGAATAATATGGATGTTAGCAGTGAGTATGTTCTGAAGCTAAAACATGAAATTGAAGAACAGTGTGCTGAGGTGTTTCCTGCACCAGCTGATCGAGAAAAGGTAAAATCTTGTTTGACTGAGTTGGCAGATAGTAGCAATGCTTTCAAGCAAGCTTTGACTGCTGGCATAGAACAACTTGTGTCAACCATTGCACCTCGATTAAGACCAATATTAGACAGCGTTGGAACAATTAGCTATGAGCTTTCAGAGGCTGAGTATGCAGATAATGAGGTGAATGACCCATGGGTTCAGAGACTTCTCCATTCTGTTGAGACAAATGTGGCTTGGCTGCAGCCACTAATGACTTCTGACAATTATGATACTTTTGTTCATTTAATTGTTGACTTCATTGTGAAAAGGCTAGAAGTTATTATGATGCAGAAAAGATTTAGTCAGCTAGGCGGTCTTCAGCTTGACAGAGATGCCAGAGCTTTGGTAAGTCACTTCAGTGTCATGACACAGAGAACTGTCAGAGACAAGTTTGCACGTCTTACTCAAATGGCAACAATTCTAAATTTAGAAAAGGTTTCTGAGATTCTAGATTTCTGGGGTGAGAACTCTGGACCTATGACCTGGAGATTAACCCCAGCCGAAGTTAGGCGTGTATTGGGTCTGCGGGTTGATTTTAAACCAGAAGCAATAGCTGCTGTGAAGTTGTAA 2226 0.4807 MGTTPEANGSNVADEETLGGSINFGTAEAVEYVRSLTDVGAMTRLLHECIAHQRAVDVELDELLSQRTDLDRHLLQLQRSSDVLDIVNSDAEYMLSNVASTSDLADQVSRKVRELDLAQSRVRNTLLRIDAIVERANSLEGVHRALEDEDYESAARYVQTFLQIDAQYKDSGSDQLQRDRLLAAKKQLEGIVRKKLSAAVDQRDHPAILRFIRLFTPLGVEEEGLQVYVGYLKKVIAMRSRMEFEQLVETMDQRNVNFVGCLTNLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSAILNKYMEYRKLAKLSSEINAHNTSLLAVGGGPEGPDPREVELYLEEILSLMQLGEDYTEFMISKIKGLTSIDPELLPRATKAFRSGSFSKVAQDLTGFYVILEGFFMLENVRKAIRIDEQVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVVAVLSGASSLLGNEYHEALQQKIRETNLGAKLFFGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPAPADREKVKSCLTELADSSNAFKQALTAGIEQLVSTIAPRLRPILDSVGTISYELSEAEYADNEVNDPWVQRLLHSVETNVAWLQPLMTSDNYDTFVHLIVDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFSVMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIAAVKL* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0079 741 Pfam COG4 transport protein 183 481 IPR013167 -
Vra5g0079 741 SMART cog4.2seq4 181 483 IPR013167 -
Vra5g0079 741 Gene3D - 573 741 - -
Vra5g0079 741 Coils Coil 739 741 - -
Vra5g0079 741 Coils Coil 60 80 - -
Vra5g0079 741 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 29 741 - -
Vra5g0079 741 Gene3D - 495 572 - -
Vra5g0079 741 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 29 741 - -
Vra5g0079 741 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0079 Vra-Chr5 616000 621040 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0079 K20291 - gmx:100778820 1355.12