Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0070 ATGAGTACTATGAAATTTTGCCGTGAATGTAACAACATTCTCTACCCTAAGGAAGACAGAGATCAGAAGATTCTTCTCTACGCTTGTCGTAACTGCGACCATCAGGAGGTTGCGGATAACTTCTGTGTATACAGGAATGAGATACATCATTCTGTTGGAGAGCGCACTCAAGTGTTACAGGATGTAGCTGCAGATCCAACGCTTCCTCGGACCAAGTCTGTTCGCTGCACTCAATGCAATCATGGTGAAGCTGTCTTTTTCCAGGCAACAGCCAGAGGGGAAGAAGGAATGACACTTTTTTTCGTTTGCTGCAATCCAAACTGTGGATACCGATGGAGAGACTGA 345 0.4522 MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQDVAADPTLPRTKSVRCTQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0070 114 SMART Cys4_2 74 114 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vra5g0070 114 CDD Zn-ribbon_RPB9 64 113 IPR034012 GO:0006379
Vra5g0070 114 Pfam RNA polymerases M/15 Kd subunit 4 39 IPR001529 GO:0006351
Vra5g0070 114 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Vra5g0070 114 PANTHER DNA-DIRECTED RNA POLYMERASE 1 114 IPR012164 GO:0006351
Vra5g0070 114 Pfam Transcription factor S-II (TFIIS) 75 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vra5g0070 114 SUPERFAMILY Zinc beta-ribbon 1 48 - -
Vra5g0070 114 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Vra5g0070 114 ProSiteProfiles Zinc finger TFIIS-type profile. 72 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vra5g0070 114 Gene3D - 1 46 - -
Vra5g0070 114 Gene3D - 47 114 - -
Vra5g0070 114 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 114 - -
Vra5g0070 114 SUPERFAMILY Zinc beta-ribbon 51 114 - -
Vra5g0070 114 PIRSF RNApol_RpoM 4 114 IPR012164 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0070 Vra-Chr5 550983 553591 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0070 K03017 - mnt:112091205 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0070 5 550983 553591 Vra5g0070 5 550983 553591 ECH
Vra7g2783 7 48081265 48084780 Vra5g0070 5 550983 553591 PCT