Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0069 ATGAGAGTTCTGGAAAGTGCTTCTCTGGTTGAACTTCTCACTCTTCTGAATATGGCTTTGCAGAAGTATGCTCCTTCTGGTCATGCACCTCCCATTAATATGAAACATTTGACCTTTTCCAGTAAGATGCCTAAGAAAGCCGAGCATGACACGGCATGTCAGAATCATAACATGGATGTGGATATTGACCTGAGGGAAGTTTATTTTCTCATTATGCACTTTCTTTCAGCCGGGCCATGTCATAAAACTTATTTACAATTTTGGAATGAGCTTCTTGAGCATGAACTTTTGCCTAGAAGGTATCATGCGTGGTATTCAAAGACTGGAGCATGTAGTGGAGACAAAGATGATGATGGTCTATCATTCCCTTTAAATTACAATATGTTAGTGGAGAGGTATCCTCATATTGAAAAGGATCACCTGGTAAAGCTTTTAAAGCAATTGTTATTAAGTACAACCATTCCATCACTGGGTATGAATCTTGGAAATGCCCCAAATGCGGCTGATGTACCTACACTTTTAGGAAGTGGTTCATTTTCACTGCTGAGCTATGATAGGGATAAAATGAAAGAAGTCAAACGGCCACCTCCTCACATGCGCTGGCCTCATATGAAAGCCAATCAAGTTCATGGGCTTAATTTGAGGGAAATCGGGGGTGGTTTCCCAAGACATCACCGTGCACCATCTATACATTCTGCATGCTATGCCATTGCAAAACCTTCTACCATGGTGCAAAAAATGAAAAATATCAAGAGGTTAAGAGGACACCGCAATGCTGTTTATTGTGCTATATTTGATCGGTCTGGAAGGTATGTGATTACTGGTTCAGATGATCGACTTGTAAAGGTTTGGTCAATGGAAACTGCATATTGTTTGGCCAGTTGCCGTGGACATGATGGTGACATCACTGATTTGGCTGTGAGTTCAAACAATGCTTTAGTTGCATCCTCGTCAAATGACTGTGTCATTCGAGTTTGGCGCTTGCCAGATGGCTTGCCAATATCAGTATTGCGGGGACATACTGGAGCTGTTACAGCCATAGCATTTAGTCCCAGACCAAATGCTGTATACCAGCTTTTATCTTCCTCTGATGATGGAACTTGTAGGATATGGGATGCAAGGTATACCCAATCAAGTCCAAGATTATATATTCCAAGGCCTTCAGATTCTGTAATTGGGAAGAGCAGTGGCCCATCTTCAAGTACTGTACCACAGAGCCATCAGATTTTTTGCTGTGCATATAATGCTAATGGAACTGTCTTTGTAACTGGTAGCTCTGACAATCTTGCTAGGGTTTGGAATGCTTGTAAACTTAGCACAGATGACAGTGACCAACCAAATCATGAGATAGACGTGCTATCTGGCCATGAGAATGATGTGAATTATGTGCAATTCAGTGGTTGTGCTGTTGCATCCCGGTTTTGCACAACAGAAACTTGGAAGGAGGAAAATATTCCCAAATTTAAAAATTCCTGGTTGAATCATGATAACATAGTTACCTGCTCTCGTGATGGGAGTGCTATAATATGGATTCCTAGATCTCGTAGATCACATGGAAAAAGTGGTCGCTGGACACGGGCATATCATCTAAGAGTTCCACCTCCACCTATGCCTCCTCAACCTCATAGAGGTGGTCCTCGTCAGAGAATTCTACCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTTGACAACCGCTTTGTTCTTGCAGCTATTATGGATTGCAGAATTTGTGTTTGGAATGCATCTGATGGAAGCTTAGTACACTCATTGACTGGGCATACTGAATCTACATATGTTCTGGATGTTCATCCTTTCAATCCCCGAATAGCTATGAGTGCTGGATATGATGGAAGAACTATTGTTTGGGACATATGGGAGGGCATGCCTATCCAGATATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAATTTTCTCCAGATGGGACATCAATTATACTTTCGGATGATGTTGGTCAACTATATATATTAAGCACAGGTCAAGGCGAGTCCCAAAAAGATGCGAAATATGATCAGTTCTTTCTCGGTGATTATCGACCTCTGATTCAAGACACCCACGGGAATGTACTAGACCAGGAAACTCAAATTGTCCCGTATCGACGGAATGTGCAAGATTTGCTTTGTGATTCAGCAATGATACCATACCCTGAACCTTATCAGAGTGAATTTCAGCAAAGAAGATTAGGAGCATTAGGCCTTGAATGGCGTCCATCATCGCTAAGGCTTGCTGTTGGTCCTGATTTCAATCTGGACCCTGATTATCACATGCTTCCATTGGCAGACCTGGATTTGGTTACAGAACCACTGCCTGAGTTTATAGATGTTATGGAATGGGAACCTGAAGTTGAGGTGTTTAGCGATGATGCAGATTCAGAATATAACGTCACTGAAGATTGCTCTTCTAAGGGTGAGAAAGGATGTTCAAGCTCCAATGCTTCTGGTGATTCAGGGTGCAGCACAGACAACAGCGAAGGGGAAGACAATCACATGGAAAGCATCCGTAGATCAAAGAGGAAAAAACAGAAGACTGAGACTGAGATTATGACTTCTTCCGGTAGACGTGTGAAAAGGAGGAACTTGGATGAGTGTGATGACAATACCATTGGGAGTAGCCGACGTAGGAAGGGAAAAAGTGGCCAAAAAATATCAAGAAGGAAATTTTCAAAATCTAAATCTTCCCGGCCTCAAAGGGCTGCTGCACGCAATGCTCTTCATCTATTTTCTAAAATTACTGGTACACCAACAGACGGAGATGGAGATGAAGATAGTTTGATTGGTGATTTTTCAGACAGTGAATCAACATTGCAAGAGTCTAATATTGACAGTGATGAATCTGATGGAACTTTACAGAATGATCAATTGAATTATTCCAAGGGAAAAGAAGTATCCTATTATGAATCAGAGGACACAAAATCTCAGGAGTTAACTGAAACTCGTGTGAATTCAATGAACAAGAGGAGGTTGGTTCTGAAGTTGCCAATTCGTGATATATCCAAGTCCACAAACGAGTTTGATTACCAGGCTGAGTTGGCTGGCTCATCATCAAAAACTATACCAGAGGTTACTGATTTTAATGAAAACAGACCAAGTTTTAAGGATTCAAGTTATTATTCTGGCAGTACAAGTAACCCTACAGTGGAAAGAACAGATCAAGCAAAACTTGGCCAAGTGAAAGACCATGTAGATTTGCTGGGTAAAATTAAATGGGGAATGGTTAGGGCACGATCATCTAAACCGTTGAGAGTGGGAGAAGCTATGCCATCGGAGGAAAATCCTTACTCTGGAAAATGTCCTAATCATGATGAGAAACAGAATGTTAGTAGTGGGCATGAGAAAGAGGAGAAGAACTTTAGTGCACCAACCCCTGAGTTTGAAACCCAAAATGATGACAGTCTGCTTGATAGTTTGGCAGAGATTAATGAAAACTGTGCTGATACTACCACCTCACAGCCTTTTAATCCCACCGTTAATGGAGGAGAGATCGCAGGTTCCAGCAATTGCAGGGGCAAAGATGAATCACTAATTCCTGCATATGTGATTCCTCAGGATACTGTTCCTGCTTCAATCAGCTATAGTGGGGTTGACCAACTACCTGAACCAAATATTAGTTTTTGTTCTGTTTCAACAAAACTAAGGTCGAAAAGGGGTGCAAGGGATCCTGAAAGTCCATCCAAGCATGAAACAAAATCGTCTGTGCTAAAGAATACTGCGTGTAGCTCTAATGATAATACTATTTTGAACAATGAACAGCACGTGCTTGTGGATGACAACACTAGAGATAAATCCAATCTGGGAGAGAATGTATCTCATGAAATAGATCCTCAGATTAGAGAGAATAGTACTTCACAGGATTTGCTAGAACCACAAGCACAAAGAGATAAAATGTATAAAGCCGTTTATAGAAGGTCAAGATCACATAGGGCTGTGACTAATTTAGCTGACAGTGGTGGCCAGGGTGAATCTACTTCAAATGGGAGCAACAGTAATTTCAACACCGCAGCAGACTTCTGTAATGGCACAGATGAGACTGTTCATATCAATGGCTCCTTAGAGTTGGAACCAAATACTTGTGACCCAAACTATGAGCAGAATAATTGCAAAGTGCTGCAAGGACATCATGGAGATTCTATTATTAAAAGTCCACAAAATGTTTCCACAAGTGGAGGACAACTCACAGAAGAAGAAAGGGGTTCTAGCTCAAAATTGACTGTTGGTTTGAGGTCTACTAGGAGTCGGAGATCTAGTTATAATATTCGTGAGAATAGTCCTGTAAATAAAAGGAAATCACTACAATCGAATGTGAAAGTATCATGGTTGTTGTTATCAACCCATGAAGAAGGATGCAGATATATTCCACAACAGGGAGATGAAGTTGTATATTTGAGACAGGGACACCAAGAGTATATAGATTATTGTCGTAAAAATGAGTCAGGGCCTTGGAATTCACTCAAGGGACATATAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTGGAGTATTCCCATCTTGCAGGATCTGGTGATAGCTGCTGCAAAATGACCCTTCAGTTCGTAGATCCCAATTCAAGTGTTGATGGGAAATCTTTTAAGTTAACCCTACCTGAAGTTACTAATTTCCCAGATTTTCTAGTTGAAAGAACTAGGTTTGATGCCGCTATGCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAGAAGTGAGGATAATTCCTCTGGTAATTGGTGGGATGGTCGAATTTTGTGCGTAAAAGCCAAGTCTTCCGAATTTTCAGATAGTCCATGGGAGAGCTGTACTGTTCGGTACAAAAATGACCTCACTGAAACGCATTTGCATAGTCCTTGGGAGCTTTTTGATGCTGAAACTGTATGGGAACAGCCTCACATTGATGATAGCATGAGAAATAAAGTGCAATCTGCTCTCACCAAATTACTGCAGTCAGGCAACACAGTCCAGGATCGTTACGGAGTGCATGAATTGAAGAAGATTTCAGGCAAGTCCAAATTTATAAACAGGTATCCTGTTCCTATATCACTTGAATTGGTGCAGTCAAGGCTGAAGAACAATTACTACCGTAGTTTGGAGGCTCTGCAGCACGATGTGACAAATTTACTGGCTAATTCCACTTCCTTTTTTGAAAAGGATGCTGAGATGTCAGCAAAAATCAAACGCCTATCAGAATGGTTCACACGAACATTATCATCTCTATAG 5244 0.4123 MRVLESASLVELLTLLNMALQKYAPSGHAPPINMKHLTFSSKMPKKAEHDTACQNHNMDVDIDLREVYFLIMHFLSAGPCHKTYLQFWNELLEHELLPRRYHAWYSKTGACSGDKDDDGLSFPLNYNMLVERYPHIEKDHLVKLLKQLLLSTTIPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDKMKEVKRPPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIHSACYAIAKPSTMVQKMKNIKRLRGHRNAVYCAIFDRSGRYVITGSDDRLVKVWSMETAYCLASCRGHDGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARYTQSSPRLYIPRPSDSVIGKSSGPSSSTVPQSHQIFCCAYNANGTVFVTGSSDNLARVWNACKLSTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFCTTETWKEENIPKFKNSWLNHDNIVTCSRDGSAIIWIPRSRRSHGKSGRWTRAYHLRVPPPPMPPQPHRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGMPIQIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNVQDLLCDSAMIPYPEPYQSEFQQRRLGALGLEWRPSSLRLAVGPDFNLDPDYHMLPLADLDLVTEPLPEFIDVMEWEPEVEVFSDDADSEYNVTEDCSSKGEKGCSSSNASGDSGCSTDNSEGEDNHMESIRRSKRKKQKTETEIMTSSGRRVKRRNLDECDDNTIGSSRRRKGKSGQKISRRKFSKSKSSRPQRAAARNALHLFSKITGTPTDGDGDEDSLIGDFSDSESTLQESNIDSDESDGTLQNDQLNYSKGKEVSYYESEDTKSQELTETRVNSMNKRRLVLKLPIRDISKSTNEFDYQAELAGSSSKTIPEVTDFNENRPSFKDSSYYSGSTSNPTVERTDQAKLGQVKDHVDLLGKIKWGMVRARSSKPLRVGEAMPSEENPYSGKCPNHDEKQNVSSGHEKEEKNFSAPTPEFETQNDDSLLDSLAEINENCADTTTSQPFNPTVNGGEIAGSSNCRGKDESLIPAYVIPQDTVPASISYSGVDQLPEPNISFCSVSTKLRSKRGARDPESPSKHETKSSVLKNTACSSNDNTILNNEQHVLVDDNTRDKSNLGENVSHEIDPQIRENSTSQDLLEPQAQRDKMYKAVYRRSRSHRAVTNLADSGGQGESTSNGSNSNFNTAADFCNGTDETVHINGSLELEPNTCDPNYEQNNCKVLQGHHGDSIIKSPQNVSTSGGQLTEEERGSSSKLTVGLRSTRSRRSSYNIRENSPVNKRKSLQSNVKVSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIDYCRKNESGPWNSLKGHIRAVEYCRVQSLEYSHLAGSGDSCCKMTLQFVDPNSSVDGKSFKLTLPEVTNFPDFLVERTRFDAAMQRNWTRRDKCRVWWRSEDNSSGNWWDGRILCVKAKSSEFSDSPWESCTVRYKNDLTETHLHSPWELFDAETVWEQPHIDDSMRNKVQSALTKLLQSGNTVQDRYGVHELKKISGKSKFINRYPVPISLELVQSRLKNNYYRSLEALQHDVTNLLANSTSFFEKDAEMSAKIKRLSEWFTRTLSSL* 1748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0069 1747 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 288 - -
Vra5g0069 1747 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 328 - -
Vra5g0069 1747 PANTHER WD REPEAT DOMAIN 9 32 1747 - -
Vra5g0069 1747 Pfam Bromodomain 1686 1732 IPR001487 GO:0005515
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1220 1292 - -
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1221 1237 - -
Vra5g0069 1747 ProSitePatterns Trp-Asp (WD) repeats signature. 612 626 IPR019775 -
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1382 1423 - -
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1112 1128 - -
Vra5g0069 1747 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 434 IPR001680 GO:0005515
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1262 1282 - -
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1035 1055 - -
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1090 1137 - -
Vra5g0069 1747 Gene3D - 1644 1747 IPR036427 GO:0005515
Vra5g0069 1747 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 626 IPR001680 GO:0005515
Vra5g0069 1747 MobiDBLite consensus disorder prediction 831 881 - -
Vra5g0069 1747 MobiDBLite consensus disorder prediction 883 901 - -
Vra5g0069 1747 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 372 - -
Vra5g0069 1747 MobiDBLite consensus disorder prediction 810 830 - -
Vra5g0069 1747 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 381 IPR001680 GO:0005515
Vra5g0069 1747 MobiDBLite consensus disorder prediction 795 979 - -
Vra5g0069 1747 Pfam WD domain, G-beta repeat 333 372 IPR001680 GO:0005515
Vra5g0069 1747 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Vra5g0069 1747 Pfam WD domain, G-beta repeat 586 625 IPR001680 GO:0005515
Vra5g0069 1747 Pfam WD domain, G-beta repeat 291 326 IPR001680 GO:0005515
Vra5g0069 1747 Pfam WD domain, G-beta repeat 405 434 IPR001680 GO:0005515
Vra5g0069 1747 CDD Bromo_WDR9_I_like 1619 1747 - -
Vra5g0069 1747 SUPERFAMILY WD40 repeat-like 244 668 IPR036322 GO:0005515
Vra5g0069 1747 MobiDBLite consensus disorder prediction 937 969 - -
Vra5g0069 1747 CDD WD40 249 625 - -
Vra5g0069 1747 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1318 1337 - -
Vra5g0069 1747 Gene3D - 234 386 IPR015943 GO:0005515
Vra5g0069 1747 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1312 1337 - -
Vra5g0069 1747 Gene3D - 400 472 IPR015943 GO:0005515
Vra5g0069 1747 Gene3D - 485 683 IPR015943 GO:0005515
Vra5g0069 1747 SMART WD40_4 585 625 IPR001680 GO:0005515
Vra5g0069 1747 SMART WD40_4 446 511 IPR001680 GO:0005515
Vra5g0069 1747 SMART WD40_4 396 434 IPR001680 GO:0005515
Vra5g0069 1747 SMART WD40_4 288 327 IPR001680 GO:0005515
Vra5g0069 1747 SMART WD40_4 544 582 IPR001680 GO:0005515
Vra5g0069 1747 SMART WD40_4 330 372 IPR001680 GO:0005515
Vra5g0069 1747 SMART WD40_4 246 285 IPR001680 GO:0005515
Vra5g0069 1747 MobiDBLite consensus disorder prediction 1238 1261 - -
Vra5g0069 1747 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 32 1747 - -
Vra5g0069 1747 SUPERFAMILY Bromodomain 1685 1745 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0069 Vra-Chr5 529112 549229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0069 245 434 Miscellaneous Gene Families AT5G08390 21.990 1.56e-09 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0069 K11797 - gmx:100818665 3030.35