Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0066 ATGTCTTCTCTCTTCACTACCAAGATGTTCTCATTGTCCACTCTCGTGCTTCTTCTCCAGCTATTCACGATTAACCTTCGCACTACAGATGGTCAAAATGTTGGCGTATGTTATGGGACATTGGGCGACAATTTACCTCCGGCAAATGAAGTTGTGGGCCTTTACCAAGAAAACTGTATCCGAAAGATGAGAATCTTTGATCCTAATAGAGATACTCTATCTGCACTTAAAGATTCAGACATCGAGCTCATTCTTGGGGTGCCGAACGTCGACCTTCAAGCTCTTGCAACCAGTCCTGACAATGCTATTACTTGGGTGCAAAACAATGTCTTGGAATTCTTCCCAAGTGTCAAAATCAAGCATGTCGCAGTTGGCAACGAAGTGGATCCCGTCGGTGAGTTTGCCCAATACGTTCTACCTGCAATCCAAAACATATACAAAGAAATTACGGCTAAAGGCCTTCAAGATCAGATTAAAGTCACAACAGTCATTTCCACAAGCATTTTAGGAAGCTCTTACCCTCCATCACAAGGGTCCTTCAGAGCTGATGCGAGATCATACATTGACCCCATACTCGGCTACTTGGTATCTGCAAATGCACCTTTACTCGCCAATGTCTACCCTTATTTTAGTTACTCTAGTAACCCTAATGACATATCACTTCCCTATGCTCTTTTCACCTCACCAAATGTTGTCGTATCGGATGGTCAATACGGATACCAGAATCTGTTTGATGCCGTGTTGGATTCGGTGCATGCTGCAATTGATAGCACTGGAGTTGGTTTTGTGGATGTTGTTGTGTCCGAGACCGGGTGGCCGTCCGATGGAGCGCTTGGCGCCAGTATTGACAATGCAAAGACCTACTTAGTGGGTTTGTTTCGTCGTTCTAAAACAGGTAGCCCTAGAAGGCCTTCGAAACCCACAGAAATCTATCTATTTAGTATGTTTGATGAGAATCAAAAGACTCCCGAGCTAGAGAAACATTGGGGGATCTTCTTTCCTAACAAAGACAAGAAGTATCCAGTTAGTTGTGTCAAAGGCAAAGAAATATAA 1053 0.4368 MSSLFTTKMFSLSTLVLLLQLFTINLRTTDGQNVGVCYGTLGDNLPPANEVVGLYQENCIRKMRIFDPNRDTLSALKDSDIELILGVPNVDLQALATSPDNAITWVQNNVLEFFPSVKIKHVAVGNEVDPVGEFAQYVLPAIQNIYKEITAKGLQDQIKVTTVISTSILGSSYPPSQGSFRADARSYIDPILGYLVSANAPLLANVYPYFSYSSNPNDISLPYALFTSPNVVVSDGQYGYQNLFDAVLDSVHAAIDSTGVGFVDVVVSETGWPSDGALGASIDNAKTYLVGLFRRSKTGSPRRPSKPTEIYLFSMFDENQKTPELEKHWGIFFPNKDKKYPVSCVKGKEI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0066 350 Gene3D Glycosidases 33 344 - -
Vra5g0066 350 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 31 342 IPR044965 GO:0004553|GO:0005975
Vra5g0066 350 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 31 342 - -
Vra5g0066 350 SUPERFAMILY (Trans)glycosidases 34 344 IPR017853 -
Vra5g0066 350 Pfam Glycosyl hydrolases family 17 34 344 IPR000490 GO:0004553|GO:0005975
Vra5g0066 350 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0066 Vra-Chr5 503474 504641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0066 41 349 Glycoside Hydrolase AT4G16260 52.090 1.97e-122 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0066 - - var:108322239 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0066 5 503474 504641 Vra5g0066 5 503474 504641 ECH