Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0027 ATGGTATCTGTTGGTTCAAAAGCATTGGTGTCAAGGAGCTCAATGGGCGACTACGATCATGAATCCCTCAAGCAAGCCAAAAGTAAGAGGAGAAAGCATAAGAAAGGGGGAGCCGCTCATGAATCTGATTCCAATCCCAAACACTCAAACACAAACTCCAACACCTTCACTTCCCCGCCTCAACTATCCCGTGTTAGGAAGCAGCTTGACCCCGAAACTACCCAATACTTCTCAGAAATTGCTAATCTTTTTGAAACTGAGGGGGTAGAATTGGAGGAACGTTCCCTTATATGTGCTAATGCGCTCCAAGAAACCAAGGGGAAAGAATTCGAAATAGCAACCGATTATATTGTTAGCCACATATTGGAGACCATCCTCCAGGGTTGTGATGTTGACCACCTTTGCGATTTCCTTCACTCTTCTGCTAAGGACTTCCCCCATATTGCAATGGATAGATCCGGTTCTCATGTTGCTGAGACCGCCATCAAGTCTTTAGCCGTTCATCTCGAAGACGATGAGGCTCGCCCTCTGGTTGAGGAGGCTTTAACCATCATATGCAAGGTGATTGCAGCAAATTCTGTTGATGTAATGTGTAACTGCTATGGTTCTCACGTGCTTCGGACTCTTCTCTGCCTTTGTAGAGGAGTACCATTAGATAGGTCTGGATACTATTTATCAAAATCGACTACCCTATTAGCAGAGCGGTTGAATTCAAAGGAGTTTTCAAAGAAAGACGATGCAACAAATTTTCAGCCTGGATTTCCAAATTTACTGAAAGTACTTGTCTCAGATATGTTAAAGCATGCTAAGAAATGTATTAAGACACTACAAGTTGACCAATTCAGTAGTTTGGTTTTCCAGACAATGCTGAGGGTCTTGGCAGGCGACGATGAAGAGTTGTTACATGTGATTCCTTTCCTTCTTGGCTGCAAGGATAAGAATAATGCAGAGGGCAATTTTATAGACGCTAAAGTAGTAGCAGATCTCAAGAATTTATTAAAAGAATCTAAATTTAGCCATCTAATGGAGGTCGTTTTGGAAGTATCTCCTGAGGCCTTGTTCAATGAATTATTCAATAAAGTATTCAGGAATTACTTGTTTGAGTTATCTTCTCACCAACATGGGAACTTTGTTGTCCAAGCATTAATTTCTTATGCAAGCAATCAAGATCTGATGGAGTTGATTTGGGAAGAACTTGGGCCAAATTTGGAGGATCTCTTCAAAATGGGAAGGTCAGGAGTTGTTGCTTCACTTGTTGCTGCCAGTGAAAGGCTTCATGTTAACGAACACAAGTGCTGTGAAGTCCTTGCTGAAGCGGTATGCCCAGTGGATGATTCTCCAAAAGGGATTGTTCCACGACTCATGTTTCTTGACAGTTGTTTCACATATGACGATAAGTCCAACTGGAGCTGGCAAAGTGGTGCTAGAATGAATGTCATGGGTTCTCTGATCTTACAGACAGTATTCCGGTTTAGAAGTGAATATATACAACCTTATATCAAAAGTATAACTTCCATGGAGGCAACTCATGTTCTTGAAGCAGTGGGAGATTCAAGAGGATCACATGTTATTGAGGCTTTTCTAAGTTCAGGAGCTTCTGGGAAACTGAAGCGCAGATTGATTACCAAATTGCAAGGACATTTTGGGGAGGTCGCACTCAACTCATCTGGTGCTTTTACCGTTGATAAGTGCTTCACGGCCAGTAATCTGTCCCTAAGAGAGACTATAGTGTCCGAGGTGTTAGCTGTGCGAAGTGATCTTTCCAAGACAAAGCAGGGCTCTTATCTATTAAGGAAACTAGATATTGACGGATTTGCTGCGAATCCTGATCATTGGAGGTCAAAACAAGCATCCAAAGAATCTACTTACAAAGATTTTTACTCTATGTTTGGTTCGAACGATACAAAGTTGATGAAAAACGATTCCTTTCTTATAGACACCTCGAATAACAAATCTAATCCAAACACTGTAAAGGAAATGAGGAAAGAAATTGACCAATCTCTAGGTTCTGGTGCACCTTTTTTGAGCTTCCAAAAGAAAAACCCAAAGAAAGAAAAACACAAAAATAAGAGAAATGCTTATATTAGTGGAGATGATGATGAGTCTAATAGAAAAAAGAGGTCTAAAAAGGAAAAGGTTGAAAGTGGGTTTGATACTGCTGCTACTGCAGCAAGCGGGAAGACAGTGAAGAAACGACGAAGAGATGGTGATCTTTCCGAGGCTTCTCTAAAGAAAGTGAAGGCATAG 2247 0.4121 MVSVGSKALVSRSSMGDYDHESLKQAKSKRRKHKKGGAAHESDSNPKHSNTNSNTFTSPPQLSRVRKQLDPETTQYFSEIANLFETEGVELEERSLICANALQETKGKEFEIATDYIVSHILETILQGCDVDHLCDFLHSSAKDFPHIAMDRSGSHVAETAIKSLAVHLEDDEARPLVEEALTIICKVIAANSVDVMCNCYGSHVLRTLLCLCRGVPLDRSGYYLSKSTTLLAERLNSKEFSKKDDATNFQPGFPNLLKVLVSDMLKHAKKCIKTLQVDQFSSLVFQTMLRVLAGDDEELLHVIPFLLGCKDKNNAEGNFIDAKVVADLKNLLKESKFSHLMEVVLEVSPEALFNELFNKVFRNYLFELSSHQHGNFVVQALISYASNQDLMELIWEELGPNLEDLFKMGRSGVVASLVAASERLHVNEHKCCEVLAEAVCPVDDSPKGIVPRLMFLDSCFTYDDKSNWSWQSGARMNVMGSLILQTVFRFRSEYIQPYIKSITSMEATHVLEAVGDSRGSHVIEAFLSSGASGKLKRRLITKLQGHFGEVALNSSGAFTVDKCFTASNLSLRETIVSEVLAVRSDLSKTKQGSYLLRKLDIDGFAANPDHWRSKQASKESTYKDFYSMFGSNDTKLMKNDSFLIDTSNNKSNPNTVKEMRKEIDQSLGSGAPFLSFQKKNPKKEKHKNKRNAYISGDDDESNRKKRSKKEKVESGFDTAATAASGKTVKKRRRDGDLSEASLKKVKA* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0027 748 MobiDBLite consensus disorder prediction 728 748 - -
Vra5g0027 748 MobiDBLite consensus disorder prediction 670 748 - -
Vra5g0027 748 SMART pum_5 188 225 IPR001313 GO:0003723
Vra5g0027 748 SMART pum_5 361 396 IPR001313 GO:0003723
Vra5g0027 748 SMART pum_5 543 578 IPR001313 GO:0003723
Vra5g0027 748 SMART pum_5 268 302 IPR001313 GO:0003723
Vra5g0027 748 SMART pum_5 506 542 IPR001313 GO:0003723
Vra5g0027 748 SMART pum_5 104 139 IPR001313 GO:0003723
Vra5g0027 748 SMART pum_5 324 359 IPR001313 GO:0003723
Vra5g0027 748 Pfam Pumilio-family RNA binding repeat 367 395 IPR001313 GO:0003723
Vra5g0027 748 Gene3D - 476 664 IPR011989 -
Vra5g0027 748 SUPERFAMILY ARM repeat 89 601 IPR016024 -
Vra5g0027 748 MobiDBLite consensus disorder prediction 1 63 - -
Vra5g0027 748 MobiDBLite consensus disorder prediction 43 63 - -
Vra5g0027 748 MobiDBLite consensus disorder prediction 691 716 - -
Vra5g0027 748 Gene3D - 62 413 IPR011989 -
Vra5g0027 748 ProSiteProfiles Pumilio RNA-binding repeat profile. 360 397 IPR001313 GO:0003723
Vra5g0027 748 PANTHER NUCLEOLAR PROTEIN 9 24 700 IPR040000 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0027 K14790 - gmx:100797960 1219.53