Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0009 ATGCTTCTGAATATGTCCCTGGACTCGGAGACATCTGGCTCAGGCAGAGATTGGTTCTTCCCGTCGCCATCGTTCTTGCGCTCCTCTTCTTCGCAGTACGGGCATCGATTCTATTCACACTCAAAGCCTGACACCCCTCCTACCCTCACTGGCATCCGTCATCGCCGTAGAGTTAAATTCCCCCGGACTCCCACTCTCACGAACGACAAACCTCAAGTTCCCAACACTGAAAATGCCAAGTCATCTGCCAAGAATAACCTTATATTCCTCTCGCAATCTCGCTTCCAGTTTGCTATTGTGACGTTGACTATTATTTTCTTCTTGCTGCTGTTGCTGCTCCGTAATGCGCATCTAGAAAGTCAACTCACTAAGTTGCAGGGTGATATTCTCGGCCTTAATCTCAGATTACACGCGTGCCAACGATTGGACTCCTTGAACGTGACAAGTTCCACATCTCAAGACGCGAATCCTGGGTTACGCGAAAATTTCAAAAGAAATCTAGCTCTCTTTTTCTCCTTCACACTTCTTTTTATCCCTCTCATAATTTTCAAGTACATAGACTATGTGTCGAAATCAATATTTTCTGATAATATATCCGAAAGAGTTTCTCTAAACAAGCAAATAGCATATCGGGTTGATGTCTTTTTATCGGTTTACCCGTATGCCAAACCCCTCGTGTTGTTGGTGGCAACGCTGTTGCTAATTTTACTTGGAGGGTTGGCCCTTTTTGGGGTAACTACCGAGGATTTAGCACATTGCCTCTGGTTATCTTGGACCTACGTTGCTGATTCTGGCAATCATGCCAGCTCCCAAGGTATTGGTCCAAGGTTAGTTGCGATTTCCATTAGCTTTGGAGGGATGCTTATATTTGCAATGATGCTTGGACTTGTGTCCGACGCAATATCTGAGAAATTTGACTCGCTGAGGAAAGGAAAAAGCGAGGTGGTTGAGCAAAATCATACTTTAATTCTTGGTTGGAGTGATAAACTGGGTTCATTACTAAATCAGCTCGCCATAGCCAATGAGAGCCTGGGTGGAGGAACTGTTGTAGTGATGGCTGAGCGAGACAAGGAAGAAATGGAGCTTGACATTGCAAAAATGGAGTTTGGTTTCAAAGGAACATCTGTCATATGCAGAAGTGGCAGCCCTCTGATTCTGGCTGATCTGAAAAAGGTTTCTGTTTCAAAAGCACGTGCTATCATAGTCCTCGCTGAAGATGGGAATGCTGATCAGAGTGATGCCCGTGCATTGAGAACGGTCTTAAGTCTAACTGGAGTGAAAGAAGGATTACGAGGGCACATAGTGGTTGAATTGAGTGATCTAGACAATGAGGTCCTTGTTAAACTTGTGGGTGGTGATCTTGTTGAAACTGTTGTAGCTCATGATGTCATTGGTCGCTTGATGATTCAATGTGCACGGCAGCCTGGACTTGCACAGATTTGGGAAGACATACTAGGATTTGAAAATTGTGAATTCTACATCAAAAGATGGCCGCAGTTGGAAGGCATGCAATTCGAGGATGTATTAATCAGCTTTCCTGCTGCAATTCCTTGTGGAATCAAAGTTGCAACATACGGTGGTAAAATTATTTTGAATCCAGATGACTCCTACGTTCTACAAGAAGGTGATGAGATTCTGGTTATTGCAGAGGATGATGATACCTATGCCCCGGCATCTTTGCCTACGGTTTGGAGAGGAAGCTTGCCCAAAGACTTTGTTTATCCAAAATCTCCGGAGAGGATTCTTTTGTGTGGTTGGAGGCGTGATATGGAGGATATGATCATGGTTTTGGATGCATCTTTAGCGCATGGATCAGAACTCTGGATGTTCAATGATGTTCCAGAAAAAGAAAGAGAAAAGAAGCTAACTGATGGTGGCCTTGACATAAATCGACTAGAAAATATATCTCTGGTTAATCGGGATGGGAATGCTGTTATACGTCGCCACTTGGAAAGCCTTCCTTTGGAATCGTTTGATTCAATATTGATTTTGGCTGATGAATCAGTAGAGGATTCAGCTATTCAAGCTGACTCTAGATCTCTTGCCACTCTACTTTTAATTCGTGACATACAAGCTAGGCGTCTTCCTTATGTAGCAATGGCCAGTCAAGTCCGTGGAGGAAGCTTCTCTAAAGGCTCATGGATTGGGGAAATGAAGCAGGCTTCTGATAAAAGTGTTATAATTAGTGAAATTTTGGATCCTAGGACAAAAAATCTTCTATCTATGTCAAGGATTAGTGATTATGTTTTATCAAATGAACTTGTCAGCATGGCTTTGGCCATGGTTGCAGAAGATCGGCAGATAAATGATGTACTGGAGGAGCTCTTTGCGGAGGAGGGAAATGAGATGCATATAAGGCCAGCAGATCTATACCTTTTTGAAGGTGAAGAATTGAGTTTCTATGAGATAATGTTACGGGCTCGACAGAGAAGAGAGATTGTGATTGGCTACCGTATAGCAAATGCAGAGAGGGCAGTCATTAATCCCCCAGCAAAAACTCACAGACGGAAGTGGTCATTGAAGGATGTTTTTGTGGTGATTACAGAAAAGGAATGA 2556 0.4331 MLLNMSLDSETSGSGRDWFFPSPSFLRSSSSQYGHRFYSHSKPDTPPTLTGIRHRRRVKFPRTPTLTNDKPQVPNTENAKSSAKNNLIFLSQSRFQFAIVTLTIIFFLLLLLLRNAHLESQLTKLQGDILGLNLRLHACQRLDSLNVTSSTSQDANPGLRENFKRNLALFFSFTLLFIPLIIFKYIDYVSKSIFSDNISERVSLNKQIAYRVDVFLSVYPYAKPLVLLVATLLLILLGGLALFGVTTEDLAHCLWLSWTYVADSGNHASSQGIGPRLVAISISFGGMLIFAMMLGLVSDAISEKFDSLRKGKSEVVEQNHTLILGWSDKLGSLLNQLAIANESLGGGTVVVMAERDKEEMELDIAKMEFGFKGTSVICRSGSPLILADLKKVSVSKARAIIVLAEDGNADQSDARALRTVLSLTGVKEGLRGHIVVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPQLEGMQFEDVLISFPAAIPCGIKVATYGGKIILNPDDSYVLQEGDEILVIAEDDDTYAPASLPTVWRGSLPKDFVYPKSPERILLCGWRRDMEDMIMVLDASLAHGSELWMFNDVPEKEREKKLTDGGLDINRLENISLVNRDGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSRSLATLLLIRDIQARRLPYVAMASQVRGGSFSKGSWIGEMKQASDKSVIISEILDPRTKNLLSMSRISDYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRPADLYLFEGEELSFYEIMLRARQRREIVIGYRIANAERAVINPPAKTHRRKWSLKDVFVVITEKE* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0009 851 Pfam Castor and Pollux, part of voltage-gated ion channel 461 558 IPR010420 -
Vra5g0009 851 PANTHER ION CHANNEL CASTOR-RELATED 6 851 - -
Vra5g0009 851 PANTHER ION CHANNEL POLLUX-RELATED 6 851 IPR044849 GO:0006811
Vra5g0009 851 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 319 468 IPR036291 -
Vra5g0009 851 Gene3D - 310 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0009 Vra-Chr5 99243 109629 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0009 K21866 - gmx:732613 1478