Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0008 ATGGCTCATGAGTCACTCTCAGAAACTCCAGATATCTCGCCGCCCTCATCTACATCACAGTTGCAGTCAGATCCATCTCTTTCAAGAAACGGATCTTTTAGCCGGCTTAACGCTCAGGCACCAGAATTTGTGCCAACTCGAGCCACCCCACGGACCGATTTGCAGCAACCCAGGCTTGTTGTACCACCTCCTCCTCCAGCTTCTAGTATGGTACACGTTTATTCACCGCCCCATTTACCGATTCAAGGTCATGTCGTCCCGGTACAGAATCACCATCATAATCTTGGCCATCAGCATCACGTTCCAGTTCACTACCGGCCTCATCATCACCCACATCAGTATTATGTTAGTTCTGATTCTACCGTGCAGCAGTCTCAAGTTGACCAGGATCGTCTTCCTTCTTCCAAAAGCAAGCTGTCTGATGAAGCCAGTCAGAAAATATTGAATCAGGTGGAGTATTATTTCAGTGATTTAAACTTAGCTACTACCGATCATTTGATGAGGTTCATCAGCAAAGATCCAGAAGGTTTTGTGCCTATATCTGTTGTCGCATCTTTCAAAAAGATTAAGGCCCTCATAACCAGTCACTCCCTACTTGCCACTGTTTTGAGGAACTCATCAAAGCTCGTGGTTAGTGAAGATGGAAAGAAAATCAGACGCCAGTATCCCCTGACCGAGTCTGATATAGAAGAGCTACAATCTCGCATTGTTGTAGCTGAAAACCTACCTGAGGATCATTGTCATCAGAATCTTATGAAGGTTTTCTCAGTAGTTGGGAGTGTGAAGACTATCCGTACCTGTCCACCCCAAACCTCCAATAGTGGGGCTTCTTCTGCTTTGAGATTGGGAAAAGTTGATGGTTTGCCCTTATCTAACAAGTTGCATGCATTTGTTGAATATGAATCTATTGAGCTGGCTGAGAGAGCAGTTGCTGAGCTGAATGATGAGGGAAACTGGAGGAGTGGCCTTCGGGTTCGCCTAATGCTTAGACGCATGTCTAAACCATCCCAAGGACGAGGAAAGAAGGGACTTGATGTTGAAGTTGGCTGTGATGAGGATTATACTTCTGTGCCTGAGCCACATGCAAGTGAGAAACAATTAGAAGATGCTTCCTTCCCCGATACTCAGTTGCATGAACATGCTGGAGAAGAGCATGGTTATGAAAAAGAGACTGGGCAAAGGAAAGGTCGAAGCCGGGGCCGGGGTAAGGGACGAGGCCGAGTGCATTGTCATCAGAATAGTCGTGTGGGAACACCCCCTTCAAATAATACAATTTTCACGGATCAAGTAATTGCCAAGCAACCACCAGGGCCCCGAATGCCGGATGGTACAAGAGGATTTTCAATGGGTAGGGGGAAGCCGGTAGCTGTCAATATAGCCTAA 1383 0.4657 MAHESLSETPDISPPSSTSQLQSDPSLSRNGSFSRLNAQAPEFVPTRATPRTDLQQPRLVVPPPPPASSMVHVYSPPHLPIQGHVVPVQNHHHNLGHQHHVPVHYRPHHHPHQYYVSSDSTVQQSQVDQDRLPSSKSKLSDEASQKILNQVEYYFSDLNLATTDHLMRFISKDPEGFVPISVVASFKKIKALITSHSLLATVLRNSSKLVVSEDGKKIRRQYPLTESDIEELQSRIVVAENLPEDHCHQNLMKVFSVVGSVKTIRTCPPQTSNSGASSALRLGKVDGLPLSNKLHAFVEYESIELAERAVAELNDEGNWRSGLRVRLMLRRMSKPSQGRGKKGLDVEVGCDEDYTSVPEPHASEKQLEDASFPDTQLHEHAGEEHGYEKETGQRKGRSRGRGKGRGRVHCHQNSRVGTPPSNNTIFTDQVIAKQPPGPRMPDGTRGFSMGRGKPVAVNIA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0008 460 SUPERFAMILY RNA-binding domain, RBD 217 339 IPR035979 GO:0003676
Vra5g0008 460 MobiDBLite consensus disorder prediction 414 430 - -
Vra5g0008 460 MobiDBLite consensus disorder prediction 114 141 - -
Vra5g0008 460 MobiDBLite consensus disorder prediction 1 67 - -
Vra5g0008 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 332 IPR000504 GO:0003723
Vra5g0008 460 Pfam La domain 147 205 IPR006630 -
Vra5g0008 460 CDD RRM_La_like_plant 235 329 IPR034878 GO:0003723
Vra5g0008 460 MobiDBLite consensus disorder prediction 106 141 - -
Vra5g0008 460 ProSiteProfiles La-type HTH domain profile. 137 228 IPR006630 -
Vra5g0008 460 Gene3D - 226 337 IPR012677 -
Vra5g0008 460 MobiDBLite consensus disorder prediction 379 460 - -
Vra5g0008 460 MobiDBLite consensus disorder prediction 379 397 - -
Vra5g0008 460 SUPERFAMILY "Winged helix" DNA-binding domain 141 231 IPR036390 -
Vra5g0008 460 PRINTS Lupus La protein signature 150 167 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra5g0008 460 PRINTS Lupus La protein signature 176 191 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra5g0008 460 PRINTS Lupus La protein signature 207 220 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra5g0008 460 PRINTS Lupus La protein signature 292 310 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra5g0008 460 PANTHER LA-RELATED PROTEIN 6B-LIKE 429 456 - -
Vra5g0008 460 PANTHER LA-RELATED PROTEIN 6B-LIKE 23 421 - -
Vra5g0008 460 MobiDBLite consensus disorder prediction 9 39 - -
Vra5g0008 460 CDD LARP_6 145 220 - -
Vra5g0008 460 PANTHER LUPUS LA PROTEIN-RELATED 429 456 IPR045180 -
Vra5g0008 460 PANTHER LUPUS LA PROTEIN-RELATED 23 421 IPR045180 -
Vra5g0008 460 Gene3D - 134 225 IPR036388 -
Vra5g0008 460 SMART la 141 221 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0008 Vra-Chr5 75968 86149 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0008 K15191 - gmx:100801679 756.133