Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1215 ATGAAGTTTGGAAATGAAGAAGAAGAAGAAGAAGAAGTGAAGGTTAGCTTGTGGAAATCAGATAACATGCCGAAATGCTATGATTTTGATCAAGGAATAAAAACCAGCTTGAGTGTACAAGCATTATCCCATTTGCCAGATCGTAGCAAAGTCAATATAGTTGCTACTCAGAATGAGAGTAGCCTCTTTTCAAGTTCTCTGTCAGAGTTGTTTAGCAGGAAATTGAGATCATCAGCAAATAATGCTTTATATGGGCATTCTGTTGACACTGTTGCTTCCCACTACGAGGAAGAAAGACTTTTTGACTCTCTTGAAGAACTTGAGGCTCAAATTATTGGAAATCTACTCCCCAGTGATGATGATTTCCTTTCTGCAGTGACAAATGAACTTGAGCTCGACCAGATCATCCAAGACAGCTCTGGTGAGGACGTGGATGAACTAGAACTTTTCAGTAGTCTTGGAGGAATGGATTTAGGAGATGATAATAGTCCATCTTCTGGACAAAAGAATTCTGAAATCCTTGATGGAGCTTGTAACAGTCAACTAGGACTGTGTAGTGCCTTAATTGATGGGGAACAGTGTTACGAGAAACACCCTTCTAGAACATTAGTTGTGAGAAACATTAATAGTGATGTCAAAGATTCTGAATTGAGATCTCCTTCTGAGGATACTCCTTCCAAGAAATATATGAATCAGGGCACCCTTGTGGTCTTTCTGTATGATTCATCTGTTTCGAGTAATGAGCTTCACCGTATATTTAATGTATATGGAGAAATAAAGGAGATTCGAAAAAGCCCACATGATCTACTACATCACAAGTTGATTGAATATTATGATTCTGGAGCAGCAGAGGCAGCTCTCCATGCTTTAAATAGAGATGATACTATCAGGAAGAGGCTAAAGGTTGAACCATACCTATCTGAAGACTCAAAACGGAGTATGGCTCAACAGATCCATCCAGAACTAGAACGGAAAGGAAGTAACCTTTATCTGCATCAGAACAGCCCTCCTCTTAAGTCACCAACTAGCTTGCCAGGTTTGCGTGGCATTTCTGAACCTGGTAAGATGGATGGTGGAAGAATTCTTGGTGTTGAGCCTGCCTCATGTACACCATCTGTGAAAACTGCTTGTGTTCATGGGGTCTCTTCAAGTGTTTCCAAGTCATTACCATCACTGGTCAGTGTTAAGTCGTTTGACAACAGATGTGAAATTACTGAGTACGATTCACCAGGCCAGTTGAATTTTGATGTTCAAGACGCATCAGCTTCTCATCCCCATTTCCTTCCAGAATTTCATGATGGTTTAGCTAACAGTGTTTGCCGTACTTCTCCTGAGGTGGCAGCAAACATCAATCTTAAAACACAAGAAAGAATAGAAAGCATGCAGTTCTGTCCAGTAAACTCCAATGGACGCTTCATGGAATTCAATGAATGTGTTTTCAAATCCTCTTGTAATGGAAGCTTCCCTCTTCCTCCTGACCATCATTACAAATGTGGGAACTTCTATCAGCCTCCTGAAATGATGTGGCCAAATTCACCTTTATATTTTGATGGAGTTTGTCCATCCCCCACCCTGCCAAGATTGCATGGACTTCCTAGGTCACCATCTAATATGATGACAACTGTTCTACCCATAAATAGCCAGCATGTGGCTTCAGCTCCTTTTTGGGACAGAAGACATACCTATGCAGGGGCATCTCTTGGGAATATGCATTTTTCTGGTAATACAACATCAAATTGTGCTGACTTTGTTTCTTGCAATTTCATTCCCCATTTTGGGGGAAACTGTGTTGATTTTCGAATCCTCCCCAAGCACCCTGGACTCCATTTTCATAACCAAAAGGACCTAATGTTTCCTGGAAGAAACCATATGATTAATTCATTTGAGACTCACAAACAACGTACTAGAAGCAGGAGAACTGAAGGTGTGTCAGACTTGGCAGACAAGAAACAGTATGAACTTGATATTGACCGCATAAAGAGAGGGGAAGATATCCGAACAACACTTATGATAAAGAATATTCCTAACAAGTATACATCCAAGATGCTGTTGGCTGCTATTGACGAACGTCATAGAGGAACATATGATTTTGTTTACCTACCAATTGATTTCAGGAACAAATGTAATGTGGGATATGCATTCATCAACATAACCAATCCCGACTTGATTATACCATTCTATCAGGTGTTCAATGGAAAGAAATGGGAGAAATTCAACAGTGAGAAAGTGGCATCACTTGCATATGCTCGCATACAAGGGAAAGCAGCACTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGCTGCAGGCCTATCCTCTTCAATACAGATGGCCCTAATGCCGGTGACCAGGTTCCTTTCCCAGTGGGCATTAATATTCGCAACAAATCTGTAAGAGTGAGAAGCAGCATTCAGGAGGATAGCCTCCAAGGGAGTCAACATAATTTGGGAATCAGCAAGCTCTCATCTGATGGAGACAGTCATTCGTTGGAGTCAGACTAA 2514 0.4101 MKFGNEEEEEEEVKVSLWKSDNMPKCYDFDQGIKTSLSVQALSHLPDRSKVNIVATQNESSLFSSSLSELFSRKLRSSANNALYGHSVDTVASHYEEERLFDSLEELEAQIIGNLLPSDDDFLSAVTNELELDQIIQDSSGEDVDELELFSSLGGMDLGDDNSPSSGQKNSEILDGACNSQLGLCSALIDGEQCYEKHPSRTLVVRNINSDVKDSELRSPSEDTPSKKYMNQGTLVVFLYDSSVSSNELHRIFNVYGEIKEIRKSPHDLLHHKLIEYYDSGAAEAALHALNRDDTIRKRLKVEPYLSEDSKRSMAQQIHPELERKGSNLYLHQNSPPLKSPTSLPGLRGISEPGKMDGGRILGVEPASCTPSVKTACVHGVSSSVSKSLPSLVSVKSFDNRCEITEYDSPGQLNFDVQDASASHPHFLPEFHDGLANSVCRTSPEVAANINLKTQERIESMQFCPVNSNGRFMEFNECVFKSSCNGSFPLPPDHHYKCGNFYQPPEMMWPNSPLYFDGVCPSPTLPRLHGLPRSPSNMMTTVLPINSQHVASAPFWDRRHTYAGASLGNMHFSGNTTSNCADFVSCNFIPHFGGNCVDFRILPKHPGLHFHNQKDLMFPGRNHMINSFETHKQRTRSRRTEGVSDLADKKQYELDIDRIKRGEDIRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFVYLPIDFRNKCNVGYAFINITNPDLIIPFYQVFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPVGINIRNKSVRVRSSIQEDSLQGSQHNLGISKLSSDGDSHSLESD* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1215 837 Gene3D - 192 320 IPR012677 -
Vra4g1215 837 PANTHER PROTEIN MEI2-LIKE 4 222 827 - -
Vra4g1215 837 PANTHER PROTEIN MEI2-LIKE 4 14 218 - -
Vra4g1215 837 SUPERFAMILY RNA-binding domain, RBD 234 313 IPR035979 GO:0003676
Vra4g1215 837 SUPERFAMILY RNA-binding domain, RBD 668 753 IPR035979 GO:0003676
Vra4g1215 837 MobiDBLite consensus disorder prediction 810 837 - -
Vra4g1215 837 PANTHER RNA RECOGNITION MOTIF-CONTAINING 222 827 - -
Vra4g1215 837 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 218 - -
Vra4g1215 837 MobiDBLite consensus disorder prediction 330 363 - -
Vra4g1215 837 Pfam RNA recognition motif 2 666 762 IPR007201 -
Vra4g1215 837 CDD RRM3_MEI2_like 669 754 IPR034454 -
Vra4g1215 837 MobiDBLite consensus disorder prediction 810 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1215 Vra-Chr4 19104131 19111853 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1215 - - var:108327001 1571.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1215 4 19104131 19111853 Vra4g1215 4 19104131 19111853 ECH