Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0790 ATGTCTTCCCCAAGCAAGCGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTCCATGGACCCAATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTGAGAGTTGAGTTGCCTGATGCTTATCCTTATAAATCTCCTTCCATTGGCTTTGTCAACAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTTAATGTGTTTGAGGTGTTTCTACCACAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCGGCTTTAATGATGCGTGACCGATCTGCTTATGAGATAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAGCCTGAAGACATAGGGGAAGTCACTGAAGAGAAATCCAGTGATGAGGAGATGAGTGAAGATGAATCTGATTCTAGTGATGAGCAGGTTGTTGGTAAAGCAGACCCCTAG 552 0.4257 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRSAYEIRVKEYCEKYAKPEDIGEVTEEKSSDEEMSEDESDSSDEQVVGKADP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0790 183 MobiDBLite consensus disorder prediction 150 183 - -
Vra4g0790 183 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Vra4g0790 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA 3 183 - -
Vra4g0790 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Vra4g0790 183 SMART ubc_7 4 148 - -
Vra4g0790 183 MobiDBLite consensus disorder prediction 156 172 - -
Vra4g0790 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Vra4g0790 183 CDD UBCc 7 143 IPR000608 -
Vra4g0790 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Vra4g0790 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Vra4g0790 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0790 Vra-Chr4 14680362 14683044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0790 3 150 Miscellaneous Gene Families AT3G17000 24.051 8.26e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0790 K10576 - gmx:100812138 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0790 4 14680362 14683044 Vra4g0790 4 14680362 14683044 ECH
Vra4g0790 4 14680362 14683044 Vra9g0560 9 6204561 6207283 PCT