Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0297 ATGAGAAGAAGCAACAACTTGATAGGTTTACTAAACTTCATTACTCTGGTGTTGTCAGTTCCAGTTCTGGGAGGTGGGATATGGCTGGCCACCAGATCCAACGGCACAGAATGCCTGAAGTTTCTTCTGTTGCCGTTGATCATCATAGCAGTGAGCATCATGGTGACTTCCTTGGCCGGTTTAACCGGTGCCTGTTACCGAAACCTGTTGCTGATGAGGCTCTACCTGGTGGCCATGATCCTCATAATGCTGGTGTTCCTCGGATTCATCATCTTTGCATATGCTGTAACGGATAAGGGTTCGGGGAGGGAGACAGAGAAGCGCGCTTACTTGGAGTATTACCTGGAGGATTACGAGGGTTGGTTGAAGGAACGCGTGGAAAGTGACGAATACTGGACAAAAGTTAGCTCTTGTGTTAAGGAATCTAAGCTTTGTCGGAAACTTGGGAGAACCATTAATGGAGTGCCTGAATCTGCTGAAACCTTCTACTTAAGAAATCTTTCTCCTATTCAGTCTGGATGTTGCAAGCCCCCGACAGAATGTGGTTACAGATATGAGAACGAGACAGTGTGGAGCTCAGAAGGAGTTGTGGGAAGCAACAAGACAGATTGCAGAAATTGGAGCAATGACCAAAGCGTGCTGTGCTACGACTGTGACTCATGCAAAGCTGGTGTGCTGGCTACACTCAAGAAAACTTGGAGAAGGGTCTCTGTTATCAATATCCTTGTCTTACTTTTCCTTTTCCTTATTTACATAGTTGCTTATGCAGCCTACAAGAACAACCGCAGAATAGATAACTGTCAACCCTGCGGTGAAACAAAGATCATCAAGTTACAACCTAGTACATTCTTATGTTAA 858 0.4522 MRRSNNLIGLLNFITLVLSVPVLGGGIWLATRSNGTECLKFLLLPLIIIAVSIMVTSLAGLTGACYRNLLLMRLYLVAMILIMLVFLGFIIFAYAVTDKGSGRETEKRAYLEYYLEDYEGWLKERVESDEYWTKVSSCVKESKLCRKLGRTINGVPESAETFYLRNLSPIQSGCCKPPTECGYRYENETVWSSEGVVGSNKTDCRNWSNDQSVLCYDCDSCKAGVLATLKKTWRRVSVINILVLLFLFLIYIVAYAAYKNNRRIDNCQPCGETKIIKLQPSTFLC* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0297 285 PANTHER TETRASPANIN-8-RELATED 1 279 IPR044991 GO:0009734|GO:0016021
Vra4g0297 285 PANTHER TETRASPANIN-3-LIKE 1 279 - -
Vra4g0297 285 PRINTS Transmembrane four family signature 6 29 - -
Vra4g0297 285 PRINTS Transmembrane four family signature 39 65 - -
Vra4g0297 285 PRINTS Transmembrane four family signature 66 94 - -
Vra4g0297 285 Pfam Tetraspanin family 6 252 IPR018499 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0297 Vra-Chr4 5659678 5663186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0297 1 278 Miscellaneous Gene Families AT5G60220 58.273 9.68e-110 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0297 - - gmx:100820399 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0297 4 5659678 5663186 Vra4g0297 4 5659678 5663186 ECH
Vra4g0297 4 5659678 5663186 Vra2g0675 2 5680741 5685660 PCT