Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0290 ATGAGTGACGAAGGTGAAAGGACTTGTCCTCTCTGTGCGGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCATGCAAATGTGGTTATGAGATATGTGTCTGGTGTTGGCATCACATACTGGATATGGCTGAGAAGGATGACACAGAGGGACGATGCCCTGCGTGTCGTTCTCCGTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGTCTGAAGTTCATATGGAAAAAAAGATGAAGAACCAGAAAGCAAAGTCTAAATCATCTGAAGCACGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGGAACCTTGTTTACATAGTGGGCTTGCCTCTCAATCTGGCTGATGAAGATCTTCTCCAGCAGCGAGAATATTTTGGTCAGTATGGGAAGGTCTTAAAAGTCTCAATGTCTCGTACAGCTTCTGGTGTTGTTCAGCAGTTTCCAAACAGTACATGCAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCAATTCGATGCATTAAAAATGTACATGGATTCGTTTTGGAGGGTAGACCTTTAAGGGCTTGCTTTGGAACCACTAAATATTGTCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCGGATTGTCTATATCTGCATGAAATTGGCTCTCAAGAGGATAGTTTCACTAAAGATGAAATAATTTCAGCATACACTAGTCGTGTTCAACAAATTACTGGTGCTGCAAACAACATGCAACGTCGAACTGGTGATGTGTTGCCACCTCCATTGGATGATTGCACAAATACTTCATCAGGGAAACCAACTGTGAACAATGCGGCAAGTACCACTGTTAGCATTGTTAAGGGTTCACCTCCTAATGGGATTTCTGGGAGACCTGTATCTCTTTCTTCTGCTGCATGGGGTACGCGGGCTACAAATTGTCAGCCAGCTGCTGGTGGTTTATTATGTGTAAATGGATTGTCCAAGCCTAAACCTGATACAATTAACAACACACTCCCCTTTTTGTCTGCTTTTACTGGCACAATTGAGGCTTCCTTAAATAGTGATGTGACAAAGAGACCACTGTCAAGTGATGGGAGTCATAGTATGACTGCCGGGGTAAAAGATGGATTATTGAAATCTGTTAAACAATATAGTACCATGGATGACAATTCCAGAGCTGGTGAAAGAACTATAGCTTCTGATGTTCATCTTTCACCTGTGAAATTGAACAACCAGTTGTCTTCTCTACCATTGCCCAAAGATGGTGATACAAGCAGTTGTACTGCTATGAATGCACCAAATTGTATTCACATCACTGGACAGTCATGCAGCTTTGGTCCTGAGGAAGCAATTATTTCTACAAGTGAAGAGATTGAGAATTTGTCTTGTAATTTGTCTTCTATTTATATTGATGGAAATTCCGCAAATGACCACTACAGTCAACCCAAACCTATCAGCTCATGTGATAACATGTCGGGTAAACCTATGCAATCTCAAGAATCACAATATAATTCTGACAAATATAGAGATGTCATGAGTACAAATGCAGACACTAAAGCTACTACCTTAGATAATGAGGTTCGTAATGTAAAGGAACAGTGTGATTTGTCATTGGTTTCTCAATCTCAAGTACTATCGGTTAATACTGAAGTGGAAGATGACGTAACAACTTTTGATAATCAAAGACTTAAGGATCCAGAAGTTGTTTCTTCATATTTGCCAAAGTCAGCCAGTTTTCGTCATGTCCCAAATCATTCTCATCCACATATCCTGCAGCATGGTGAATCATGCAATGTTGTAAATGCTGGTTCTTTAGATGCCAATTATAAAGTTGGGGATGACTCACTATTACATACAAATAACATATTATGCAACGGATATTCTGAGAAATCAATGAGCTCTAGTTCTTATGGTTTCTTCCATGATGAAAGGAATGAACAACATATTGGAAGTTTATTTAGTGAAACGGTCAGTATTGGAAGTGATGTTATGGACAAGGGTGAGAATAGTATAATTTCAAATATTTTGTCCATGGAGTTTGACACCTGGGGTGACTCGGTAACATCACCTCAGAGTTTGGTCAAGTTGTTGGGTGACAATGCGGACAAGCAGAATGGCTCACTAAAAAAAAGTAGTTCTTGGAAAATTCAATGTAACAATCAGTCCAGATTTTCTTTTGCAAGACAGGAGGAATCCAAAATCCAAGCCAATGTACATCCATCTTCTGGTGCCATCCAACAATATCCAAGCAAGGGCTCACTCTTACATGATTTTGTGGAAAGAGACTTTTCTTTGGACAAGCTGGGTATCACAAATAGCTTCCCCTCCAATAACCTCGAAGAATCTGGAAATCTTGGCAGTGGTCAATTTTTTCCTTCAAACAATAAGCTTTCTGCTGTTCCAAGAGCACAAATTTCAGCACCACCAGGATTTTCTGTACCAAACAGGGCACCACCTCCTGGTTTCTCTTCTCTTGAGAGAACAGGGAATGCTTTTGACTCCGTTTCTGGGAATTTGGTGCGTGACCCTTCTTTCTTACTGAGAAATTCACATCAAACACCCTCAAATGGAAATATCGGTGGTCCAGGAGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGTAAAGGGAGAATTCATGGTTCACGAAATAGCCCATTGCTGGACATGCGGTCCAATTACCCTGAACAGTTAAATTATTTGGAAAATGAGGCTAGAGTTCAATTATTGATGCAAAGATCTCTATCACCACAGCAAAACCTTCGATTTTCTGATATTGGAAATTCCTTTTCTCAGTTTGGTGATTCCTATGGCATCTCTTCTAGGTTAAATCAATCACAAGTCAGTAGTCTGGCTCCATTTCCTCAGTTGTCTCTTCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGTCAATTGGATGGATGGAATGAAGTGCAGAGTGGAAATAGTTTGGGTGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAGTTTTATAGAGGATATGATGAAACAAAATATCGGATGCCTAATTCTAGGGATCTGTACAACAGAACATTTGGGATTTGA 3075 0.4029 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVSEVHMEKKMKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDLLQQREYFGQYGKVLKVSMSRTASGVVQQFPNSTCSVYITYSKEEEAIRCIKNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTSRVQQITGAANNMQRRTGDVLPPPLDDCTNTSSGKPTVNNAASTTVSIVKGSPPNGISGRPVSLSSAAWGTRATNCQPAAGGLLCVNGLSKPKPDTINNTLPFLSAFTGTIEASLNSDVTKRPLSSDGSHSMTAGVKDGLLKSVKQYSTMDDNSRAGERTIASDVHLSPVKLNNQLSSLPLPKDGDTSSCTAMNAPNCIHITGQSCSFGPEEAIISTSEEIENLSCNLSSIYIDGNSANDHYSQPKPISSCDNMSGKPMQSQESQYNSDKYRDVMSTNADTKATTLDNEVRNVKEQCDLSLVSQSQVLSVNTEVEDDVTTFDNQRLKDPEVVSSYLPKSASFRHVPNHSHPHILQHGESCNVVNAGSLDANYKVGDDSLLHTNNILCNGYSEKSMSSSSYGFFHDERNEQHIGSLFSETVSIGSDVMDKGENSIISNILSMEFDTWGDSVTSPQSLVKLLGDNADKQNGSLKKSSSWKIQCNNQSRFSFARQEESKIQANVHPSSGAIQQYPSKGSLLHDFVERDFSLDKLGITNSFPSNNLEESGNLGSGQFFPSNNKLSAVPRAQISAPPGFSVPNRAPPPGFSSLERTGNAFDSVSGNLVRDPSFLLRNSHQTPSNGNIGGPGDIEFMDPAILAVGKGRIHGSRNSPLLDMRSNYPEQLNYLENEARVQLLMQRSLSPQQNLRFSDIGNSFSQFGDSYGISSRLNQSQVSSLAPFPQLSLQQSRNAVLSNGQLDGWNEVQSGNSLGVAELLRNERLGFNKFYRGYDETKYRMPNSRDLYNRTFGI* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0290 1024 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1024 - -
Vra4g0290 1024 SMART rrm1_1 111 192 IPR000504 GO:0003723
Vra4g0290 1024 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Vra4g0290 1024 Gene3D - 111 192 IPR012677 -
Vra4g0290 1024 CDD RRM_CNOT4 105 204 IPR034261 -
Vra4g0290 1024 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Vra4g0290 1024 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Vra4g0290 1024 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1024 IPR039780 GO:0004842|GO:0030014
Vra4g0290 1024 SUPERFAMILY RING/U-box 3 66 - -
Vra4g0290 1024 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Vra4g0290 1024 SMART rrm2_1 111 192 IPR003954 GO:0003676
Vra4g0290 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Vra4g0290 1024 MobiDBLite consensus disorder prediction 479 505 - -
Vra4g0290 1024 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Vra4g0290 1024 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0290 Vra-Chr4 5570088 5586507 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0290 K10643 - gmx:100796804 1614.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0290 4 5570088 5586507 Vra2g0665 2 5547093 5554325 PCT