Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0274 ATGGAAACACCAGGGGTGCCGGCAATAAACACCTATAAGAAAAAAATGGTAAAACAATTGACAGGAAAAAGGGACGATACACCTTTGCATTCTGCAGCAAGATCAGGGAATTTGGCTGTGCTGAAGGATGCCATTTGCGGAGCTAATGAGGTTGAGTTGCATGAATTATTGGCCAAGCAGAATCAAGATGGAGAAACGCCCCTTTATGTTGCTGCTGAATATGGTTACACTGATTTAGTCAGGGAGATCATTCAGTATTATGATCTTGCTGATGCTGGAATTAAAGCTAGAAATGGTTTTGATGCATTGCATATTGCTGCCAAACAAGGGGATTTAGATGTCATGAAGGTTCTGATGGAAAGTCATCCTGAGTTGTCAATGACTGTGGATCTATCCAACACCACAGCTTTGCACACTGCTGCAATACAAGGGCACACTGAGATAGTGAAGTTTCTATTGGAAGCAGGAAGTAGTCTGGCAACCATTGCTAGAAGTAATGGGAAAACAGCTCTGCATTCTGCTGCAAGAAATGGACATTTGGCTGTTGTGAAAGCACTTCTTGAGAAAGAGCCTGCGGTTGCCACGAGAATCGATAAGAAGGGCCAGACAGCACTTCACATGGCAGTGAAGGGGCAGAAGCTTGAGGTGGTGGAAGAGTTGATAAAAGCAGACCCCTCATCAACGAACATGGTTGACAATAAGGGAAACACAGCATTGCATATAGCAACCAGGAAGGGCAGGAGTAAGATTGTAAAGTTGCTTTTAGAACAGAAGGAAACGGCAACAAGTGCAGTGAATAGGTCTGGGGAAACGGCAATAGACACTGCGGAGAAAATGGGGAACAATGATGTGAAAGCCATTCTTCTTGAACATGGTGTTCAGAGTGCGAGGGCCATAAAGCCCAGTCAGGGCACAACGGCTACTACAGCCCGTGAGTTGAAACAGACGGTGAGTGACATAAAGCACGAGGTCCACCACCAGTTGGAACACACACGCCAAACCAGAAAACGCGTCCAGGGAATTGCCAAACGTATTAACAAAATGCATACGGAAGGACTCAACAATGCAATAAACTCCACAACCGTGGTGGCAGTCCTAATAGCCACTGTGGCCTTTGCGGCTATTTTCACAGTCCCTGGCCAATTCGTTGATGACCCACATGAGATTCCTCCAGGGATGTCCCTTGGGGAGGCAAACATAGCTCCAAAACCCCCTTTCATAATTTTCTTTGTGTTTGATTCCGTTGCACTGTTTATCTCTTTGGCGGTGGTGGTGGTGCAGACCTCGGTTGTGGTTATAGAAAGCAAAGCAAAGAAGCAGATGATGCAAGTGATAAACAAGCTAATGTGGATTGCTTGTGTTCTCATTTCGGTGGCGTTCTTGGCGCTGTCATTTGTAGTGGTGGGGAAGGAAGAGAAGTGGCTGGCCATAGGAGTTTCCATTATAGGAACAACCATAATGGCTACGACCTTGGGGACTATGTGTTACTGGGTCGTTAGGCATCGCATTGAGGCCTCAAATTTGAGGAGCATTCGAAAATCTTCATTGCAAAGCAGGTCTAATAAGTCTATTTCAGTGTCAGCGTTCTCAGATTCTGAGCTATTAAACAGTGAGTATTGTAAGAAAATGTATGCGATTTAG 1641 0.4528 METPGVPAINTYKKKMVKQLTGKRDDTPLHSAARSGNLAVLKDAICGANEVELHELLAKQNQDGETPLYVAAEYGYTDLVREIIQYYDLADAGIKARNGFDALHIAAKQGDLDVMKVLMESHPELSMTVDLSNTTALHTAAIQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLAVVKALLEKEPAVATRIDKKGQTALHMAVKGQKLEVVEELIKADPSSTNMVDNKGNTALHIATRKGRSKIVKLLLEQKETATSAVNRSGETAIDTAEKMGNNDVKAILLEHGVQSARAIKPSQGTTATTARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPHEIPPGMSLGEANIAPKPPFIIFFVFDSVALFISLAVVVVQTSVVVIESKAKKQMMQVINKLMWIACVLISVAFLALSFVVVGKEEKWLAIGVSIIGTTIMATTLGTMCYWVVRHRIEASNLRSIRKSSLQSRSNKSISVSAFSDSELLNSEYCKKMYAI* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0274 546 Pfam Ankyrin repeats (3 copies) 93 159 IPR002110 GO:0005515
Vra4g0274 546 Pfam Ankyrin repeats (3 copies) 13 86 IPR002110 GO:0005515
Vra4g0274 546 Pfam Ankyrin repeats (3 copies) 166 228 IPR002110 GO:0005515
Vra4g0274 546 Gene3D - 227 316 IPR036770 -
Vra4g0274 546 Gene3D - 6 162 IPR036770 -
Vra4g0274 546 Gene3D - 163 226 IPR036770 -
Vra4g0274 546 ProSiteProfiles Ankyrin repeat profile. 63 85 IPR002110 GO:0005515
Vra4g0274 546 ProSiteProfiles Ankyrin repeat region circular profile. 200 222 - -
Vra4g0274 546 ProSiteProfiles Ankyrin repeat profile. 234 256 IPR002110 GO:0005515
Vra4g0274 546 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 8 546 - -
Vra4g0274 546 ProSiteProfiles Ankyrin repeat profile. 200 222 IPR002110 GO:0005515
Vra4g0274 546 ProSiteProfiles Ankyrin repeat region circular profile. 63 85 - -
Vra4g0274 546 ProSiteProfiles Ankyrin repeat region circular profile. 98 120 - -
Vra4g0274 546 ProSiteProfiles Ankyrin repeat region circular profile. 166 189 - -
Vra4g0274 546 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Vra4g0274 546 ProSiteProfiles Ankyrin repeat region circular profile. 234 256 - -
Vra4g0274 546 SMART ANK_2a 234 263 IPR002110 GO:0005515
Vra4g0274 546 SMART ANK_2a 200 230 IPR002110 GO:0005515
Vra4g0274 546 SMART ANK_2a 24 53 IPR002110 GO:0005515
Vra4g0274 546 SMART ANK_2a 166 195 IPR002110 GO:0005515
Vra4g0274 546 SMART ANK_2a 132 161 IPR002110 GO:0005515
Vra4g0274 546 SMART ANK_2a 268 298 IPR002110 GO:0005515
Vra4g0274 546 SMART ANK_2a 63 92 IPR002110 GO:0005515
Vra4g0274 546 SMART ANK_2a 98 127 IPR002110 GO:0005515
Vra4g0274 546 Pfam Ankyrin repeat 235 257 IPR002110 GO:0005515
Vra4g0274 546 ProSiteProfiles Ankyrin repeat region circular profile. 132 159 - -
Vra4g0274 546 ProSiteProfiles Ankyrin repeat profile. 98 130 IPR002110 GO:0005515
Vra4g0274 546 ProSiteProfiles Ankyrin repeat profile. 166 189 IPR002110 GO:0005515
Vra4g0274 546 PANTHER ANKYRIN REPEAT PLANT PROTEIN 8 546 - -
Vra4g0274 546 SUPERFAMILY Ankyrin repeat 28 293 IPR036770 -
Vra4g0274 546 Pfam Domain of unknown function 351 467 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0274 Vra-Chr4 5374375 5377719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0274 13 546 Miscellaneous Gene Families AT1G07710 74.532 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0274 - - gmx:100779230 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0274 4 5374375 5377719 Vra4g0274 4 5374375 5377719 ECH
Vra4g0274 4 5374375 5377719 Vra2g0650 2 5250294 5257050 ECH