Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0246 ATGGCGTCCCAAGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAGATCTCTGCAAGAACCCCGTTGATGGATTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGCGTCACTGTAATTGGGCCTCCTGATACTCTCTATGAGGGGGGATTTTTTAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCTGAGATATGGCATCCCAATGTTTATCCGGATGGGCGAGTTTGCATATCAATTCTTCACCCTCCTGGTGACGATCCGAATGGGTACGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAAAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCTGCAAATGTTGAAGCCGCGAAAGAGTGGAGAGACAGGAGAGATGAATTCAAGAAAAAAGTTAGCCGTTGCGTGCGGAAGTCACAAGAAATGTTGTGA 501 0.4571 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTVIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDEFKKKVSRCVRKSQEML* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0246 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Vra4g0246 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
Vra4g0246 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Vra4g0246 166 SMART ubc_7 7 164 - -
Vra4g0246 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Vra4g0246 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Vra4g0246 166 CDD UBCc 17 159 IPR000608 -
Vra4g0246 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Vra4g0246 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0246 Vra-Chr4 5148946 5152985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0246 11 131 Miscellaneous Gene Families AT3G17000 31.538 3.73e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0246 K10575 - gmx:100500474 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0246 4 5148946 5152985 Vra2g0616 2 4861386 4866608 PCT