Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0219 ATGGAGAACGGGGATCAGTTCCAGGGGATTTCCAATGCGAAGTACGATTGTCTTTTATTTGATCTTGATGATACCCTTTATCCTTTGAGTTCTGGATTGGCTGAGCAAGTGAAGAAAAATATCCAGGAGTACATGCTTCAAAAGCTTGGGATAGCAGAGGCTAAAGTTCCTGAATTGTGCTTTTCCTTATACAAGACTTATGGTACAACCATGGCTGGTCTCAAGGCTATTGGCTATGACTTTGACTATGATGACTTTCATAGCTTTGTTCATGGGAGATTGCCATATGATATACTGAAACCTGACCCTGTTCTGAGGGGAGTTTTGCTGAGCTTGCCTGTTAGAAAAATTATTTTTACGAACTCAGACAAGGCCCATGCTAGTAGAGTGCTTCGCAGGCTTGGATTGGAGGATTGTTTTGAAAGTGTTATATGCTTTGAGACCCTGAATTCCTCCAATGAAGATGGCAGTGAATGTAAACCAAGTCCCGCAGGGGTTTTTGATTTTTATGAATACATTCATAGTCCTGATTCTGATGTAGTGCTTCCACGGACCCCGGTTGTATGTAAACCCTCTCAAGATGCATTTGAAAAGGTTTTCAGTATAGCAGATATAGACCCTCGAAGGACATTATTCTTTGATGACAGTCTCCGCAATTTACAAACGGGCAAATCCGTAGGCCTTCACACAGTCTTGGTGGGAAATTATGTTAGAACTATGGGAGTGGATCATGCCTTAGAGAGTATCCACAATATGAAAGAGGCATTTCCAGAACTGTGGGAAAGCGATGAGAAGCCTGAAAGTGTCAAGTGTTCTAGAAAAGTTTCGATTGAAACATCAGTAGTAGCTTAA 852 0.4155 MENGDQFQGISNAKYDCLLFDLDDTLYPLSSGLAEQVKKNIQEYMLQKLGIAEAKVPELCFSLYKTYGTTMAGLKAIGYDFDYDDFHSFVHGRLPYDILKPDPVLRGVLLSLPVRKIIFTNSDKAHASRVLRRLGLEDCFESVICFETLNSSNEDGSECKPSPAGVFDFYEYIHSPDSDVVLPRTPVVCKPSQDAFEKVFSIADIDPRRTLFFDDSLRNLQTGKSVGLHTVLVGNYVRTMGVDHALESIHNMKEAFPELWESDEKPESVKCSRKVSIETSVVA* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0219 283 Gene3D - 107 266 IPR023214 -
Vra4g0219 283 SUPERFAMILY HAD-like 17 237 IPR036412 -
Vra4g0219 283 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 183 233 IPR006439 -
Vra4g0219 283 Gene3D - 6 99 - -
Vra4g0219 283 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 1 283 - -
Vra4g0219 283 CDD HAD_5NT 17 235 IPR010237 -
Vra4g0219 283 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 12 262 - -
Vra4g0219 283 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 16 233 IPR010237 -
Vra4g0219 283 SFLD C1.5.3: 5'-Nucleotidase Like 12 262 IPR010237 -
Vra4g0219 283 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0219 Vra-Chr4 4913685 4915794 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0219 K07025 - gmx:100790444 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0219 4 4913685 4915794 Vra4g0219 4 4913685 4915794 ECH
Vra4g0219 4 4913685 4915794 Vra2g0587 2 4644291 4646883 PCT