Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0216 ATGACAAACGTTATTCCTTCATCGGCGGCATTTTCTGTCGCAACTCTCTTTGTCTCAAGCATCTTGTGGACTGTTCCAAATACTGTGCTGTCAGCTTCTTCAAACTATGAAGGCGTTACTAGGCACTATCAGTTCGATATAAGGCTGCAAAGCATTACCAGGTTGTGCCACACTAAGAACATGCTCACCGTAAATGGGAAGTTCCCGGGACCTCGTGTTATTGCTAGAGAAGGAGACAGATTAGTGGTTAAGGTGGTGAACCATGTTCCAAACAACATCACCATTCATTGGCACGGAGTGAGACAGCTACGTAGTGGATGGTCGGATGGACCATCTTACATAACTCAATGTCCCATACAAAGTGGTCAGAGTTATGTGTACAACTTCAGCTTGGTTGGGCAAAGAGGAACTCTCTTCTGGCATGCACACCACTCGTGGTTAAGGGCTACTCTCTATGGACCCCTCATCATCCTCCCAAGGACAAACGAATCTTACCCATTTGCCAAACCCTACAAGGAAATTCCCATCCTCTTTGGAGAGTGGTGGAATGTGGATCCGGAAGCAGTGATTGCACAAGCTCTTCACACAGGGGGTGGTCCAAATGCCTCTGATGCCTACACCATTAACGGACTTCCTGGACCACTCTACAATTGCTCCAGTAACGATACGTTCAACCTAAAAGTGAAGCCGGGGAAGACATATCTTCTACGTTTGATCAACGCTGCAGTGAATAATGAACTCTTTTTCAGCATAGCAAACCACACCATGACAGTCGTCGAAGCTGATGCTGCATATGTTAAACCCTTCAACTCCAAAATCATCGTCATTAGTCCAGGACAAACCACTAACGTCCTGTTGAAGACAAAACCTAAGTTCATAAATGCTACTTTCTTCATGCTAGCGAGACCTTTTTTCACCGCTAAGGGTACCTTTAACAGTTCAACGTTAGCTGGCATTCTAGAATACGAAATCGACACCCCTCCTTCGGAATCAGATTTAAAAAACCATACCCTACTGAAACCAACCCTTCCTTCTATTAACGATACTTCCTTCGTTGCGAGTTTCAGTAGTAAATTTCGCAGTTTGAACAGCGCAAAGTACCCTGCGAATGTGCCTCGGAAAGTTGACAAGAGTTTCTTCTTCACGATAGGTCTCGGGAGCATTCCGTGTCCCAGAAACCAAACATGTGAAGGGCCTAATAAGAGGACAAAATTCGCTGCTTCCATGAACAACATATCTTTCAATCTCCCTTCGGTGGCAATACTTGAACAGCATTTCTCAGGGAAGGATAATGGGGGTGTTTACACCACGGACTTCCCAGTTGTTCCTCCGAGACCCTTTAACTACACGGGGACACCACCGAATAACAGCATGGTGAAGAGTGGAACGAAGGTGGTGGTGATACCTTACAACACCAGAGTGCAGGTTGTGCTGCAGGACACTAGCATTTTGGGAGCAGAGAGTCATCCGTTACATCTTCATGGGTTCAACATGTTGGTGGTAGGTCAAGGTTTTGGAAACTTTGATCCTTTGGAAGATCCTGGCAAGTTTAATCTGGTGGACCCTGTTGAGAGGAACACCATCGGTGTGCCTTCTGGTGGTTGGGTTGCAATTCGCTTTGTCGCTGACAACCCAGGTGTTTGGCTGATGCACTGCCACATTGATTTGCACCTGAGTTGGGGATTGAGGATGGCTTGGATTGTGAACAACGGCAAACTCTCTCATCAGAAGTTGCTTCCTCCACCTTCTGATCTCCCAAAATGTTGA 1767 0.4624 MTNVIPSSAAFSVATLFVSSILWTVPNTVLSASSNYEGVTRHYQFDIRLQSITRLCHTKNMLTVNGKFPGPRVIAREGDRLVVKVVNHVPNNITIHWHGVRQLRSGWSDGPSYITQCPIQSGQSYVYNFSLVGQRGTLFWHAHHSWLRATLYGPLIILPRTNESYPFAKPYKEIPILFGEWWNVDPEAVIAQALHTGGGPNASDAYTINGLPGPLYNCSSNDTFNLKVKPGKTYLLRLINAAVNNELFFSIANHTMTVVEADAAYVKPFNSKIIVISPGQTTNVLLKTKPKFINATFFMLARPFFTAKGTFNSSTLAGILEYEIDTPPSESDLKNHTLLKPTLPSINDTSFVASFSSKFRSLNSAKYPANVPRKVDKSFFFTIGLGSIPCPRNQTCEGPNKRTKFAASMNNISFNLPSVAILEQHFSGKDNGGVYTTDFPVVPPRPFNYTGTPPNNSMVKSGTKVVVIPYNTRVQVVLQDTSILGAESHPLHLHGFNMLVVGQGFGNFDPLEDPGKFNLVDPVERNTIGVPSGGWVAIRFVADNPGVWLMHCHIDLHLSWGLRMAWIVNNGKLSHQKLLPPPSDLPKC* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0216 588 SUPERFAMILY Cupredoxins 368 588 IPR008972 -
Vra4g0216 588 ProSitePatterns Multicopper oxidases signature 2. 551 562 IPR002355 GO:0005507
Vra4g0216 588 CDD CuRO_1_LCC_plant 43 159 IPR034288 GO:0005507
Vra4g0216 588 CDD CuRO_3_LCC_plant 434 571 IPR034289 GO:0005507
Vra4g0216 588 SUPERFAMILY Cupredoxins 167 362 IPR008972 -
Vra4g0216 588 PANTHER LACCASE-17 28 588 - -
Vra4g0216 588 Pfam Multicopper oxidase 50 160 IPR011707 GO:0005507
Vra4g0216 588 Gene3D - 171 365 IPR008972 -
Vra4g0216 588 TIGRFAM laccase: laccase 40 588 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vra4g0216 588 CDD CuRO_2_LCC_plant 174 322 IPR034285 -
Vra4g0216 588 Gene3D - 393 588 IPR008972 -
Vra4g0216 588 PANTHER MULTI-COPPER OXIDASE 28 588 IPR045087 -
Vra4g0216 588 Gene3D - 24 159 IPR008972 -
Vra4g0216 588 SUPERFAMILY Cupredoxins 38 186 IPR008972 -
Vra4g0216 588 ProSitePatterns Multicopper oxidases signature 1. 546 566 IPR033138 -
Vra4g0216 588 Pfam Multicopper oxidase 173 323 IPR001117 -
Vra4g0216 588 Pfam Multicopper oxidase 442 571 IPR011706 GO:0005507|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0216 Vra-Chr4 4884415 4886961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0216 K05909 - gmx:100811833 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0216 4 4884415 4886961 Vra2g0584 2 4625666 4629595 PCT