Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0079 ATGTCTGGCCACTGGGGTATTCTTGTTTCAGATCCATGGCTTCAGAACCAGTTCACCCAGGTGGAGCTTCGCAGCTTGAAATCCCAATTCGTGAGCATGAGGAGGGAGAGTGGAAGGCTTGCGGTTGGGGACTTGGCTTCCAAGATGTCGAGGTTGAAGGTTGTGGGAGAGAATCTCAGTGAAGAAGAGAGAGCTTCTTATATTCAAGATTTGTATCAGAACATAAGTGAAGAGGTTGATTTTGAATTGTTTCTCAAGATTTACTTAAAGCTGCAAAGTTTTGCAAGTTCTAGGACGGGGAGTAATGCAAAAAACTCATCAGCGTTCCTCAAGGCTGCAACTACCACATTGCTTCACACAATAAGTGAATCTGAGAAGGCATCATATGTTGCACATATAAATAACTATCTTGCAGGAGATGAATTTCTCAAGAAATGCCTTCCTATTGATTCTTCAACCAATGATCTATTTGAAATAGCAAAAGATGGTGTTCTTCTTTGTAAGCTGATTAATGTGGCTGTTCCACGGACCATTGATGAAAGGGCAATCAATACAAAAAGATTACTTAATCCATGGGAAAGGAATGAAAACCACACGCTTTGCCTGAACTCTGCTAAAGCAATTGGATGTACAGTAGTCAACATTGGAACTCAAGACCTCATTGAAGGAAGGCGTCATCTGGTGCTCGGATTAATTTCACAGATTATTAAGATTCAACTATTGGCGGATCTGAACCTAAAGAAAACACCACAGCTTGTGGAGTTGGTCAGTGATAGTGAGGGTATGGAAGAGTTGATGAGTCTGGCACCAGAAAAGATTTTGTTAAGGTGGATGAATTTCCATTTGAAGAAATCAGGTTACAAGAGGATAGTCACGAACTTCTCCTCTGATGTTAGGGATGCAGAAGCTTATGCTCACCTTCTAAATGTTCTTGCACCTGAATACACTAATCCATCCACATTGGCTGTCAAAAATCCTTACGAACGAGCAAAATTAGTTCTTGAACATGCTGATAAGATGGGTTGCGAGCGATACATAACGGCTAGAGATATAGTGGAAGGTTCCCCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAACACAGGAATGGACTATCAACCCAAGCAAAACAAAGTTCTCTCCTTGAAAACTTGTTAGATGACACCCAAGACTCTAGAGAAGAGAGAGCATTTCGCCTCTGGATCAATAGCCTTGGAAATTCAACATACATCAACAATGTCTTTGAGGATGTTAGAAATGGGTGGGTACTCTTGGAGACTCTAGACAAAGTGTCACCAGGGATTGTGAATTGGAAGATTGCTAATAAGCCACCTATTAAGTTGCCATTTAAAAAAGTAGAGAATTGCAATCAAGTGGTGAAAATAGGGAAACAGCTTAAATTTTCACTGGTAAATATTGCTGGGAATGACATTGTGCAGGGTTATAAAAAATTAATACTAGCATATTTGTGGCAGTTGATGCGATACAACATCCTACAACTTCTAAAAAACTTGAGATTTCACTCTCATGGGAAGGAAATAACTGATGCTGATATTCTCCGATGGGCAAACGGCAGAGTCAGTAGTTCAGGAAGTCAAAGCCGAATGGATAGTTTCAAGGACAAGAGTGTATCAGATGGAATTTTTTTCCTTGAGCTTCTTAGTTCTGTGCAACCTAGAGCTGTAAATTGGGGTCTTGTAACAAAAGGAATAACTGATCAGGAGAAAATGATGAATGCCACCTACATTATCAGTATTGCAAGAAAGCTTGGTTGTTCCATATTCTTGCTTCCTGAAGACATCACTGAGGTTAATCAAAAGATGATCCTGACTCTAACAGCTAGCATAATGTATTGGTTCTTGAAACACCCTCTTGAAGAAAGAACAGTAGGGAGTTCAGACAGTGAGAGTGGGAGCCAATTGGAGACTACATCAAATTCAACACTGGATGAAGATTCTGCTTCTGATTCATCAGCAGAAGAGAATGGAAGCATGTAA 2001 0.4018 MSGHWGILVSDPWLQNQFTQVELRSLKSQFVSMRRESGRLAVGDLASKMSRLKVVGENLSEEERASYIQDLYQNISEEVDFELFLKIYLKLQSFASSRTGSNAKNSSAFLKAATTTLLHTISESEKASYVAHINNYLAGDEFLKKCLPIDSSTNDLFEIAKDGVLLCKLINVAVPRTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRRHLVLGLISQIIKIQLLADLNLKKTPQLVELVSDSEGMEELMSLAPEKILLRWMNFHLKKSGYKRIVTNFSSDVRDAEAYAHLLNVLAPEYTNPSTLAVKNPYERAKLVLEHADKMGCERYITARDIVEGSPNLNLAFVAHIFQHRNGLSTQAKQSSLLENLLDDTQDSREERAFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKLPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRYNILQLLKNLRFHSHGKEITDADILRWANGRVSSSGSQSRMDSFKDKSVSDGIFFLELLSSVQPRAVNWGLVTKGITDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPLEERTVGSSDSESGSQLETTSNSTLDEDSASDSSAEENGSM* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0079 666 ProSitePatterns Actinin-type actin-binding domain signature 1. 395 404 IPR001589 -
Vra4g0079 666 MobiDBLite consensus disorder prediction 632 666 - -
Vra4g0079 666 Gene3D - 246 374 IPR036872 -
Vra4g0079 666 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 1 666 - -
Vra4g0079 666 SUPERFAMILY Calponin-homology domain, CH-domain 121 619 IPR036872 -
Vra4g0079 666 SMART ch_5 125 238 IPR001715 GO:0005515
Vra4g0079 666 SMART ch_5 270 369 IPR001715 GO:0005515
Vra4g0079 666 SMART ch_5 395 497 IPR001715 GO:0005515
Vra4g0079 666 SMART ch_5 516 620 IPR001715 GO:0005515
Vra4g0079 666 CDD CH 270 369 IPR001715 GO:0005515
Vra4g0079 666 Pfam Calponin homology (CH) domain 395 498 IPR001715 GO:0005515
Vra4g0079 666 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Vra4g0079 666 Pfam Calponin homology (CH) domain 145 238 IPR001715 GO:0005515
Vra4g0079 666 Pfam Calponin homology (CH) domain 517 621 IPR001715 GO:0005515
Vra4g0079 666 ProSiteProfiles Calponin homology (CH) domain profile. 514 622 IPR001715 GO:0005515
Vra4g0079 666 ProSitePatterns Actinin-type actin-binding domain signature 2. 212 236 IPR001589 -
Vra4g0079 666 CDD CH 124 238 IPR001715 GO:0005515
Vra4g0079 666 MobiDBLite consensus disorder prediction 630 666 - -
Vra4g0079 666 Gene3D - 119 245 IPR036872 -
Vra4g0079 666 CDD CH 515 622 IPR001715 GO:0005515
Vra4g0079 666 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Vra4g0079 666 Gene3D - 507 619 IPR036872 -
Vra4g0079 666 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Vra4g0079 666 PANTHER FIMBRIN/PLASTIN 1 666 IPR039959 GO:0051015|GO:0051017
Vra4g0079 666 CDD CH 394 497 IPR001715 GO:0005515
Vra4g0079 666 Gene3D - 389 506 IPR036872 -
Vra4g0079 666 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0079 Vra-Chr4 2333225 2340076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0079 1 624 EF-hand Containing Proteins AT5G55400 65.016 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0079 - - gmx:100805133 1255.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0079 4 2333225 2340076 Vra9g0873 9 10293572 10301938 PCT