Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0044 ATGGGCGAAGCAAAGCTGAGCGGAATAAAGGACAATAGGTGGTCGCTCCATGGCATGACGGCTCTTGTGACAGGAGCCACTCGAGGCATTGGGCACGCCATCGTCGAGGAATTGGCAGAATTTGGAGCAGCCATTCATGTTTGTTCACGAAAGCAAGATGATATTGATAAGTGTTTGGAAGAGTGGAAAAAGAAGGGATTCAACGTCACCGGTTCAGTCTGTGACGTCAAACATCGCGACCAACGCCTCAAGCTCATGGAAACTGTTTCATCAATCTTCCACGGAAAGCTTAACATTCTGGTGAATAATGCAGCGATAGAAATAACAAAGAACATAGTAGATTACACTGTTGAAGATGTATCGACTATAATGGCTACCAATTTTGAGTCTGTTTTTCATTTGACTCAACTTGCACATCCACTTCTTAAACAATCTGGATGTGGGAGCATAGTATTCATTTCATCCATTGCTGGTGCAAAAGCTATTCCAGGTTTATCTGCTTATGCAGCCGCTAAAGGAGCCATGAATCAATTCACCAGGAGCGTAGCATCGGAGTGGGCAAAAGATAACATTCGTGCAAATGCTGTAGCACCTGGACCAATTTGGACTCCACTCTTTGAATCTGTCAGGGAGAAAACTGGAACGAAAGTGTGGGATGCTATTGTTACATCTACAATACCTTTTGGTCGAGTAGGAGAAACCAACGAAATATCACCACTGGTTGCTTTTCTTTGTCTTCCAGCTGCATCATATATCACTGGGCAGACTTTCTATGCTGATGGTGGTTTCACATCTTAA 798 0.4373 MGEAKLSGIKDNRWSLHGMTALVTGATRGIGHAIVEELAEFGAAIHVCSRKQDDIDKCLEEWKKKGFNVTGSVCDVKHRDQRLKLMETVSSIFHGKLNILVNNAAIEITKNIVDYTVEDVSTIMATNFESVFHLTQLAHPLLKQSGCGSIVFISSIAGAKAIPGLSAYAAAKGAMNQFTRSVASEWAKDNIRANAVAPGPIWTPLFESVREKTGTKVWDAIVTSTIPFGRVGETNEISPLVAFLCLPAASYITGQTFYADGGFTS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0044 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Vra4g0044 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Vra4g0044 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Vra4g0044 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 264 IPR036291 -
Vra4g0044 265 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 1 264 - -
Vra4g0044 265 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 19 205 - -
Vra4g0044 265 PANTHER TROPINONE REDUCTASE 1 264 IPR045000 GO:0016491
Vra4g0044 265 Gene3D - 4 265 - -
Vra4g0044 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Vra4g0044 265 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Vra4g0044 265 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Vra4g0044 265 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Vra4g0044 265 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Vra4g0044 265 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Vra4g0044 265 PRINTS Glucose/ribitol dehydrogenase family signature 227 247 IPR002347 -
Vra4g0044 265 Pfam Enoyl-(Acyl carrier protein) reductase 25 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0044 Vra-Chr4 1413725 1416954 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0044 1 262 Miscellaneous Gene Families AT2G29150 59.091 6.50e-103 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0044 K08081 - gmx:100786456 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0044 4 1413725 1416954 Vra4g0044 4 1413725 1416954 ECH
Vra4g0044 4 1413725 1416954 Vra2g0567 2 4456206 4458209 ECH