Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1216 ATGCCTTTTTTCTCAAAAGAAGAGAAATCCAAGAGAATAATGAGGGGCTTCAAGACTCTCTTCTTCCTGATCACTATGGTTATATCGCTTCTTCTTTTCTCTGCCCCGGTTCTTCTTGTTATTGCCGATGCGCTTCTTCCTTCCGCTCTTCTCTCCACCATTTCCTCCTCTTCTCTCTCCTTGGAAAATCTCGCTTCCCATTTCAACCACTACGATTTCCGATACTCCCTCATTGATATACCCCTCATCTCCATAATACGATCCTTCATCATCTTCTGTGTTTATAGCTTGTGTGACGGACCCAGGCTTTCGCACGGGCCTTATTTGGGGATTACGACCATGTGTTCTGTATTGTCTCTGATGTTTGTGTCGTTGAAGGCTGTTTATATCTTCAGTGTTCGGGGGATTGATCGAAGTGGGTATGTTGGAGGGACCGAAATAGCTCTGTTCGTATGCTCTTGTGCGTTGGCCGTGGGGCATGTTGTCGTGGCCTACAGAACAAGTTGCAGGGAAAGAAGAAAGCTTTTGGTATACAAAATTGACATTGAAGCTATTTCAGCTTGCAAAAATGGGTATCCCAGGTATCCCAAGATTCCTCAGGAAGAACGAATCAAATAA 618 0.445 MPFFSKEEKSKRIMRGFKTLFFLITMVISLLLFSAPVLLVIADALLPSALLSTISSSSLSLENLASHFNHYDFRYSLIDIPLISIIRSFIIFCVYSLCDGPRLSHGPYLGITTMCSVLSLMFVSLKAVYIFSVRGIDRSGYVGGTEIALFVCSCALAVGHVVVAYRTSCRERRKLLVYKIDIEAISACKNGYPRYPKIPQEERIK* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1216 205 PANTHER ALPHA/BETA HYDROLASE RELATED PROTEIN 4 203 - -
Vra3g1216 205 Pfam Cholesterol-capturing domain 54 130 IPR019498 -
Vra3g1216 205 PANTHER ALPHA/BETA HYDROLASE RELATED PROTEIN 4 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1216 Vra-Chr3 12912345 12915051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1216 8 200 Miscellaneous Gene Families AT1G80280 43.627 1.49e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1216 - - pvu:PHAVU_001G242400g 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1216 3 12912345 12915051 Vra6g0595 6 5363485 5364577 PCT