Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1201 ATGTCAAAACACCAACCAGATTGGCCAGAACCTATTGTTCGGGTTCAGTCTTTATCCGAAAGCTGCTTCGATTCCATCCCTGAAAGGTACATCAAGCCCTCTACCGATAGACCATCATCCGGAACCTCTAATTTTGATGATGCCAACAACATCCCCATCATCGACCTCGGAGGTCTCGGTGGCGCTGACCACCATGTCTCATCCTCAATTCTTAAGCAAATCTCAGACGCTTGCAAGGACTGGGGCTTCTTCCAAATCACAAACCATGGCGTTGATCCCGATTTGATGGACAAGGTTAGGGAAACTTGGCGTCAATTCTTTCACTTGCCCATGGAGCTCAAGCAACAATACGCAAACTCACCCAAAACTTACGAAGGCTATGGAAGCAGACTTGGAATCGAGAAAGGCGCTATTCTTGATTGGAGTGATTACTATTATCTTCACTATCTTCCCTTGTCTCTCAAGGACTGTAACAAATGGCCGAACTTGCCTCCCCAATGCAGGGAAGTGTTTGATGAGTATGGGAGAGAGTTAGTGAAGCTGTGTGGGAGGTTGATGAAGGTTTTGTCGATAAACCTTGGATTAGACGAAAAGATTCTTCAAAATGCTTTTGGGGGGGAAGACATAGGGGCATGTCTGAGAGTGAATTTTTACCCTAAGTGTCCACGACCAGAGTTAACACTGGGTCTCTCATCACACTCAGACCCTGGAGGAATGACCATGTTGCTTCCAGATGATCAAGTTCCTGGTCTTCAAGTTCGAAAGTTCAACAATTGGATTACTGTGAAGCCTGCACGCCATGCTTTCATCGTTAATATTGGCGATCAAATTCAGGTACTGAGCAATGCAATTTACAAGAGTGTGGAACACAGAGTGATAGTAAATTCAGATAAGGAGAGAGTTTCTCTGGCATTTTTCTACAACCCGAAAAGTGATATACCCATAGAACCAATAAAGGAGCTGGTAACAGTGAATACACCTTCACTTTATCCACCAATGACCTTCGATGAATATAGACTCTTCATTAGAATGAGAGGACCTCGAGGAAAATCTCAAGTTGAATCTCTAAAGTCTCCAAAATGA 1083 0.4404 MSKHQPDWPEPIVRVQSLSESCFDSIPERYIKPSTDRPSSGTSNFDDANNIPIIDLGGLGGADHHVSSSILKQISDACKDWGFFQITNHGVDPDLMDKVRETWRQFFHLPMELKQQYANSPKTYEGYGSRLGIEKGAILDWSDYYYLHYLPLSLKDCNKWPNLPPQCREVFDEYGRELVKLCGRLMKVLSINLGLDEKILQNAFGGEDIGACLRVNFYPKCPRPELTLGLSSHSDPGGMTMLLPDDQVPGLQVRKFNNWITVKPARHAFIVNIGDQIQVLSNAIYKSVEHRVIVNSDKERVSLAFFYNPKSDIPIEPIKELVTVNTPSLYPPMTFDEYRLFIRMRGPRGKSQVESLKSPK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1201 360 Gene3D - 10 343 IPR027443 -
Vra3g1201 360 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 208 309 IPR005123 -
Vra3g1201 360 SUPERFAMILY Clavaminate synthase-like 12 344 - -
Vra3g1201 360 Pfam 2OG-Fe(II) oxygenase superfamily 211 309 IPR044861 -
Vra3g1201 360 PRINTS Isopenicillin N synthase signature 74 91 - -
Vra3g1201 360 PRINTS Isopenicillin N synthase signature 269 295 - -
Vra3g1201 360 Pfam non-haem dioxygenase in morphine synthesis N-terminal 51 162 IPR026992 -
Vra3g1201 360 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 357 - -
Vra3g1201 360 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 9 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1201 Vra-Chr3 12773264 12776449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1201 15 357 Glycosyltransferase AT5G59530 30.423 6.80e-44 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1201 - - gmx:100814471 667.922