Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1178 ATGTACAACACCATGATTAGAGGGTACCTCCAAGCGCGTTTACCCCTCCTCGCTGTGTCCTGCTACTTGTCCATGCTCCAAAACGGCCTTGCCGTTAACAACTACACATTCCCACCTTTGGCCAAGGCTTGCATTGCGCTTCTTCCTTCTTCGAACGTCGTTGGCCGTTTGGTGCACGGCCACGTCGTTATGTTCGGGTTCGGCGACGACCCTTACGTCGTGAGTGCGTTTATCGAGTTCTACTCTGTTTCTCGTGAGGTGGAACATGCACGGGTATTGTTTGATAAAACGACAAAGAAAGATGTGGTGTTGGGGACAGCGATGGTTGACGGTTATGGTAAAATGGGGAATGTGGAAGAGGCTAGAGAAGTGTTTGAGCAAATGCCTGACAGAAACGCTGTGTCGTGGAGTGCCATGATGGCAGCGTATTCTCGAGTTAGTGACTTCAAGGAAGTGCTGGCTTTGTTTGCAGAGATGCAAAAAGAGGGTACAAAGCCGAATGAGTCCGTCCTTGTCTCGGTCCTCACTGCGTGTGCTCATCTTGGTGCATTCGCACAGGGACTGTGGGTGCATTCCTATGCCAAGAGATTCCAACTTGACTCCAATCCAATTTTGGCAACGGCTTTGGTGGACATGTATTCGAAATGTGGATGCGTAGAATCTGCTTTATCTGTTTTTCAGAGCATTGCTGATAAGGATGCGGGTGCGTGGAATGCTATGATTTGTGGTGTTGCATTGAATGGTGATGCAGAGAAATCGCTCGAGTTGTTTTATCAAATGGCTGCTTCAGGGACTAAGCCGAATGAGACTACATTTGTGGCTGTTCTCACTGCTTGCACTCATGCAAAGATGGTTCAGCAAGGCCTTTGGTTGTTTGAAGAAATGAGTAGCTCTTATGGAGTTGTCCCAAAAACGGAACACTGTGCTTGTGTTGTTGACCTTCTGTCAAGAGCTGGCATGGTAGAGGAGGCTGAGAAATTTATTGAGGAGAATATGGGTGGACTTGCAGCCAGTGATGCTAACGTGTGGGGTGCTCTTCTAAATGCATGTAGAATTCATAAAAATATTCGTGTTGGGAATAGGGTGTGGAAAAAATTGCTTGATATGGGGATCTCTGACTGTGGCACTCATGTTCTTACTTACAATATATATAGAGAAGCTGGGTGGGATGCAGACGCGAAACAAGTTAGGAGTAGGATTGAAGAAATAGGGATGAGAAAGAAGCCCGGATGCAGCATAATAGAGGTGGATAATGAAGTTGAAGAGTTTCTTGCAGGTGATCATTCTCATCCACAAGCGCAGGAAATGTGCAGATTACTGGATTCCATTCTCAAGATGGGGATTTTAGAGCACTTCTGA 1359 0.4658 MYNTMIRGYLQARLPLLAVSCYLSMLQNGLAVNNYTFPPLAKACIALLPSSNVVGRLVHGHVVMFGFGDDPYVVSAFIEFYSVSREVEHARVLFDKTTKKDVVLGTAMVDGYGKMGNVEEAREVFEQMPDRNAVSWSAMMAAYSRVSDFKEVLALFAEMQKEGTKPNESVLVSVLTACAHLGAFAQGLWVHSYAKRFQLDSNPILATALVDMYSKCGCVESALSVFQSIADKDAGAWNAMICGVALNGDAEKSLELFYQMAASGTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSSYGVVPKTEHCACVVDLLSRAGMVEEAEKFIEENMGGLAASDANVWGALLNACRIHKNIRVGNRVWKKLLDMGISDCGTHVLTYNIYREAGWDADAKQVRSRIEEIGMRKKPGCSIIEVDNEVEEFLAGDHSHPQAQEMCRLLDSILKMGILEHF* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1178 452 Pfam PPR repeat 311 330 IPR002885 -
Vra3g1178 452 Pfam PPR repeat 207 229 IPR002885 -
Vra3g1178 452 Pfam PPR repeat 1 30 IPR002885 -
Vra3g1178 452 Pfam PPR repeat 236 264 IPR002885 -
Vra3g1178 452 Pfam PPR repeat 271 297 IPR002885 -
Vra3g1178 452 Pfam PPR repeat 106 131 IPR002885 -
Vra3g1178 452 TIGRFAM PPR: pentatricopeptide repeat domain 106 131 IPR002885 -
Vra3g1178 452 TIGRFAM PPR: pentatricopeptide repeat domain 237 269 IPR002885 -
Vra3g1178 452 TIGRFAM PPR: pentatricopeptide repeat domain 134 168 IPR002885 -
Vra3g1178 452 TIGRFAM PPR: pentatricopeptide repeat domain 1 33 IPR002885 -
Vra3g1178 452 Pfam E motif 353 415 IPR046848 -
Vra3g1178 452 PANTHER - 1 415 - -
Vra3g1178 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 131 IPR002885 -
Vra3g1178 452 Gene3D Tetratricopeptide repeat domain 69 187 IPR011990 GO:0005515
Vra3g1178 452 Gene3D Tetratricopeptide repeat domain 1 48 IPR011990 GO:0005515
Vra3g1178 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Vra3g1178 452 Pfam PPR repeat family 132 179 IPR002885 -
Vra3g1178 452 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 415 - -
Vra3g1178 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Vra3g1178 452 Gene3D Tetratricopeptide repeat domain 205 423 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1178 Vra-Chr3 12499419 12501079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1178 2 444 Glycoside Hydrolase AT3G49170 30.112 9.85e-66 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1178 - - vra:106757045 910.212