Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1176 ATGGGTTGGGTCACAGACACCGTTCACTCTTTCAATTCGATTCAACTCAGAGAAGTATTCAACCAGATCATCGCTCTCGGTTTGATTGTATCATCGGCGCTCGTCATATGGAAAGGGCTAAGCTGTGTTACCGGCAGCGAATCGCCCGTCGTCGTTGTTATTTCCGGAAGCATGGAACCTGGTTTCCAACGAGGTGACATTCTGTTTTTGCACATGAGCAAGGATCCCATTCGTGCCGGAGACATTGTGGTTTACAATATAGATGGAAAAGACATTCCAATTGTTCACCGTGTAATTGAGGTTCATGAACGTAAAAATTCTGAAGAAACTTATATCCTAACAAAAGGAGACAACAATGATGACGATGACAGGGTTATGTATAATTATGGCCAGAAGTGGTTACAAAAACACCATATTATAGGAAGAGCCGTAGGGTTCTTGCCTTATGTTGGTTGGGCTACAATAATAATGTCTGATTTTCCTGTTCTCAAGTATATACTGCTAGGGACATTGGGACTGCTAGTTTTAACAATGAAGGAATAA 543 0.418 MGWVTDTVHSFNSIQLREVFNQIIALGLIVSSALVIWKGLSCVTGSESPVVVVISGSMEPGFQRGDILFLHMSKDPIRAGDIVVYNIDGKDIPIVHRVIEVHERKNSEETYILTKGDNNDDDDRVMYNYGQKWLQKHHIIGRAVGFLPYVGWATIIMSDFPVLKYILLGTLGLLVLTMKE* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1176 180 Gene3D Umud Fragment, subunit A 49 155 - -
Vra3g1176 180 SUPERFAMILY LexA/Signal peptidase 35 146 IPR036286 -
Vra3g1176 180 CDD S26_SPase_I 49 143 IPR019533 GO:0004252|GO:0006465
Vra3g1176 180 PRINTS Eukaryotic signal peptidase (S26B) family signature 53 68 IPR001733 GO:0006465|GO:0008233|GO:0016020
Vra3g1176 180 PRINTS Eukaryotic signal peptidase (S26B) family signature 112 123 IPR001733 GO:0006465|GO:0008233|GO:0016020
Vra3g1176 180 PANTHER SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 1 179 IPR001733 GO:0006465|GO:0008233|GO:0016020
Vra3g1176 180 TIGRFAM sigpep_I_arch: signal peptidase I 22 174 IPR001733 GO:0006465|GO:0008233|GO:0016020
Vra3g1176 180 Pfam Peptidase S24-like 40 144 IPR015927 -
Vra3g1176 180 PANTHER SIGNAL PEPTIDASE I 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1176 Vra-Chr3 12487162 12490944 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1176 K13280 - qsu:112008971 270.396