Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1163 ATGTTCTTCCACAGGGTGCTGTCCCGTTCCTCTGCAACCCTTTGTCGAAGCTTCACCCTTTCTGTTTCACGAAATTCCCAACCTTTCTCCAATCACTTTCATTCTCTCCTCCACCCATCACCCAACAAGCTGATTCTAGTTGAAGCTACTTTGCGGAATCCACTGAATTCATCTTTGATTTCGAGATTCGGATTTTCTTCTTCGGCCTCATCTGAACCTGCCAGTAATGACCCTGTAAAGGCATGTGAGGAAGAAAAGGTGACTGATCAGTCTGAACAAGCCAAAGCTGCTGATCAAACCAAAGAATCAGATGTAGAGAGTGAATGTGATCAATCCAGGGATGATTTAATAAAGCTTGTTGCTGAGAAGGAACAGCTTTTGAAGTTGAAACACAAGGAGATTGGGGAAATGCAGGACAAAGTTCTGCGAACATATGCGGAGATGGAGAATGTCATGGCCAGAACAAGGCGTGAAGCAGAAAATTCGAAAAAATTTGCTATACAGAATTTTGCGAAGAGTCTACTAGATGTTGCTGACAATTTGGGAAGAGCTTCCTCTGTTGTAAAGGAGAGTTTTTCCAAAATTGAATCTCCTAAGGAGTCTTCGGAAGCAGCACAACTCCTGAAAACACTTCTTGAAGGTGTTGAAATGACTGAGAAACAACTTGCAGAGGTACTGAAAAAGCATGGTGTAGAAAAATATGATCCTACAAATGAGCCATTTGATCCACACAGGCACAATGCCATCTTCCAAATCCCTGATGCTACCAAGGCCCCTGGCACTGTTGGAGTTGTTCTAAAGGCTGGATATATGCTCTATGATCGTGTTCTTCGTCCGGCAGAAGTTGGTGTAACTCAAGAAGTAGATGATAGCAAAGCAGCTGAGTGA 888 0.4324 MFFHRVLSRSSATLCRSFTLSVSRNSQPFSNHFHSLLHPSPNKLILVEATLRNPLNSSLISRFGFSSSASSEPASNDPVKACEEEKVTDQSEQAKAADQTKESDVESECDQSRDDLIKLVAEKEQLLKLKHKEIGEMQDKVLRTYAEMENVMARTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIESPKESSEAAQLLKTLLEGVEMTEKQLAEVLKKHGVEKYDPTNEPFDPHRHNAIFQIPDATKAPGTVGVVLKAGYMLYDRVLRPAEVGVTQEVDDSKAAE* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1163 295 PRINTS GrpE protein signature 142 158 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra3g1163 295 PRINTS GrpE protein signature 238 253 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra3g1163 295 PRINTS GrpE protein signature 265 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra3g1163 295 Coils Coil 284 295 - -
Vra3g1163 295 Hamap Protein GrpE [grpE]. 83 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra3g1163 295 CDD GrpE 136 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra3g1163 295 PANTHER GRPE PROTEIN 25 289 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra3g1163 295 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 231 286 IPR009012 GO:0006457
Vra3g1163 295 Gene3D - 120 229 IPR013805 -
Vra3g1163 295 MobiDBLite consensus disorder prediction 78 109 - -
Vra3g1163 295 Gene3D Head domain of nucleotide exchange factor GrpE 230 285 IPR009012 GO:0006457
Vra3g1163 295 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 122 230 IPR013805 -
Vra3g1163 295 MobiDBLite consensus disorder prediction 66 109 - -
Vra3g1163 295 Pfam GrpE 111 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra3g1163 295 ProSitePatterns grpE protein signature. 241 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra3g1163 295 PANTHER GRPE PROTEIN HOMOLOG 25 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1163 Vra-Chr3 12294882 12298394 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1163 K03687 - gmx:100812682 438.728