Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1142 ATGGCATCCATAGTTGCTGCCTCCTCTGCATTCTCAACTATCCTCACTGCTCAATTTCTCATTCCTTCTTCGTCTTCTTCTTTCTTTCTCAAAACACTCACTCGAAGGTCAACTGCGCCGTTACTCCGTCTTTCTCTTACGTCACGACGACCACTGCGTAACGTCATGGCTTACGCCACCCTTGGTCTCACTCGCCCTTCCAACACCGAAACCCCCAAGATTTCTTTCGCGTCGAAGGAGGTTGACGTGGTGCAATGGAAAGGAGACCTGCTCGCGATTGGCGTCACGGAGAAGGACTTGGCGCGAAACGCCGAAGCGAGATTCGAGAACGCGATTTTGAATTCCGTGGATTCGAAGTTGGACGGATTGTTGGCCGAGGCTTCCACCGAAGAGGACTTCACCGGCAAACCGGGCCAGTCCATAGTTCTCAGAATCGCTGGTGGACTTGGATCCAAGCGCGTGGCCCTGCTCGGCCTCGGCGCGTCCGCGTCCACCTTCGCCGCGTTTAAGTCTCTCGGCGAGGCTGTTGCTTCTGCCGCTAAGTCCGCCCAGGCTGGCCACGTCGCCGTCTCGCTTGCCTCTCCAGACGCGTTTTCCGTGGAGTCTAAACTTAAGACAGCTTCTGCAATAGCATCTGGGACTGTGCTGGGAACTTTTGAAGATAACAGGTACAAGTCTGAGTCTAAGAAATCGTCACTTAAATCAGTGGATATTATCGGGCTTGGATCTGGGCCTGAATTGGAGAAGAAACTTAAGTTTGCAGCAGATGTTTCTTCTGGAATCATTTTTGGAAGGGAGCTTGTGAATTCTCCTGCCAACGTGCTAACGCCAGGGGTATTGGCTGAAGAGGCATCAAATATTGCTGCAGCATATAGTGATGTTTTTACTGCCAAAATATTAGATGCTGAGCAGTGCAAGGAATTGAAAATGGGGTCCTATCTTGGTGTCGCTGCAGCCTCAGCAAATCCTCCACATTTTATCCATTTGTGCTATAAACCACCAAGTGGACCTGTAAATGTCAAGTTAGCATTAGTTGGAAAAGGTTTGACTTTTGATAGTGGTGGTTACAACATCAAGACCGGACCTGGCTGTATGATTGAACTCATGAAATTTGATATGGGCGGTTCTGCTGCAGTTTTTGGGGCAGCAAAAGCTCTTGGTCAAATCAAACCTCTTGGAGTGGAGGTTCATTTTATAGTTGCGGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGACATTCTCACAGCTTCAAATGGAAAGACTATAGAGGTCAATAACACAGATGCAGAGGGTAGGCTTACTCTTGCAGATGCTCTGGTGTATGCTTGTAACCAGGGTGCTGAAAAGATAGTGGACCTGGCAACATTAACTGGGGCCTGTATAATTGGTCTTGGATCCTCAATTGGAGGTGTGTTTACGCCAAGTGATGACCTGGCAAAAGAAGTTTTTGAAGCTTCAGAAGCGAGTGGGGAGAAACTATGGAGGTTGCCATTAGAAGAAAGCTACTGGGAGTCAATGAAATCAGGAGTAGCTGATATGGTGAACACTGGTGCTCGTCCAGGTAGTGCTATTACTGCGGCTCTTTTCTTAAAGCAGTTCGTTGATGAGAAGGTTCAATGGCTGCATATTGACATGGCTGGTCCAGTTTGGAATGAAAAGCAGCGCTGTGCAACAGGATTTGGTGTTGCTACTTTAGTAGAATGGGTTTTGAAGAACGCATCTTAA 1737 0.4807 MASIVAASSAFSTILTAQFLIPSSSSSFFLKTLTRRSTAPLLRLSLTSRRPLRNVMAYATLGLTRPSNTETPKISFASKEVDVVQWKGDLLAIGVTEKDLARNAEARFENAILNSVDSKLDGLLAEASTEEDFTGKPGQSIVLRIAGGLGSKRVALLGLGASASTFAAFKSLGEAVASAAKSAQAGHVAVSLASPDAFSVESKLKTASAIASGTVLGTFEDNRYKSESKKSSLKSVDIIGLGSGPELEKKLKFAADVSSGIIFGRELVNSPANVLTPGVLAEEASNIAAAYSDVFTAKILDAEQCKELKMGSYLGVAAASANPPHFIHLCYKPPSGPVNVKLALVGKGLTFDSGGYNIKTGPGCMIELMKFDMGGSAAVFGAAKALGQIKPLGVEVHFIVAACENMISGTGMRPGDILTASNGKTIEVNNTDAEGRLTLADALVYACNQGAEKIVDLATLTGACIIGLGSSIGGVFTPSDDLAKEVFEASEASGEKLWRLPLEESYWESMKSGVADMVNTGARPGSAITAALFLKQFVDEKVQWLHIDMAGPVWNEKQRCATGFGVATLVEWVLKNAS* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1142 578 Gene3D Zn peptidases 248 578 - -
Vra3g1142 578 Gene3D Leucine Aminopeptidase, subunit E, domain 1 47 247 IPR043472 -
Vra3g1142 578 PANTHER LEUCINE AMINOPEPTIDASE 2, CHLOROPLASTIC-RELATED 46 578 - -
Vra3g1142 578 SUPERFAMILY Macro domain-like 75 260 IPR043472 -
Vra3g1142 578 SUPERFAMILY Zn-dependent exopeptidases 259 575 - -
Vra3g1142 578 Hamap Probable cytosol aminopeptidase [pepA]. 76 578 IPR023042 -
Vra3g1142 578 Pfam Cytosol aminopeptidase family, N-terminal domain 93 227 IPR008283 GO:0006508|GO:0070006
Vra3g1142 578 PRINTS Cytosol aminopeptidase signature 342 359 IPR011356 GO:0005737|GO:0019538|GO:0030145|GO:0070006
Vra3g1142 578 PRINTS Cytosol aminopeptidase signature 366 387 IPR011356 GO:0005737|GO:0019538|GO:0030145|GO:0070006
Vra3g1142 578 PRINTS Cytosol aminopeptidase signature 404 425 IPR011356 GO:0005737|GO:0019538|GO:0030145|GO:0070006
Vra3g1142 578 PRINTS Cytosol aminopeptidase signature 426 446 IPR011356 GO:0005737|GO:0019538|GO:0030145|GO:0070006
Vra3g1142 578 PRINTS Cytosol aminopeptidase signature 454 469 IPR011356 GO:0005737|GO:0019538|GO:0030145|GO:0070006
Vra3g1142 578 PANTHER LEUCINE AMINOPEPTIDASE-RELATED 46 578 IPR011356 GO:0005737|GO:0019538|GO:0030145|GO:0070006
Vra3g1142 578 ProSitePatterns Cytosol aminopeptidase signature. 430 437 IPR000819 GO:0006508|GO:0070006
Vra3g1142 578 CDD Peptidase_M17 89 573 IPR011356 GO:0005737|GO:0019538|GO:0030145|GO:0070006
Vra3g1142 578 Pfam Cytosol aminopeptidase family, catalytic domain 264 570 IPR000819 GO:0006508|GO:0070006
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1142 Vra-Chr3 12018892 12031703 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1142 K01255 - gmx:100808230 954.125